Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq8 311 2e-79 seq11 131 4e-25 seq4 107 5e-18 seq1 96.9 8e-15 >seq8 Length=956651 Score = 311 bits (344), Expect = 2e-79 Identities = 620/908 (68%), Gaps = 19/908 (2%) Strand=Plus/Plus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || |||||||| | || | | || ||| |||||||| || ||||| Sbjct 456447 TAAATAAAGAAATAGATTATACAAGAGATTTTAATTATGATTATTTTGGATTTAAAACAT 456506 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | || | |||| ||| | ||| | ||| | || ||||||||||||||||| | | Sbjct 456507 TAGAGAGGTCTTACTTATTACGTATTAATAATAAAATTATTGAACGTCCTCAACATTTAT 456566 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT---AAAGCTGTTATTGAATGTT 110439 | | | || | || || || ||| |||||||| |||||| ||| ||| || Sbjct 456567 TAATGAGAGTATCTATAGGAATACATATTGATGATATTGAAAAAGCT-TTA--GAAACTT 456623 Query 110440 ATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAA 110499 | || || | | |||| | || ||||||||||||||| ||||||| | |||| Sbjct 456624 ACCATTTAATGTCTCAAAAATATTTTACTCATGCTACTCCTACATTATTTAATTCGGGAA 456683 Query 110500 CTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAG 110559 | || ||| || |||| || ||| | || ||| || |||||| || |||| Sbjct 456684 CACCAAGACCCCAAATGTCTTCATGTTTTTTATTATCAATGAAATCTGATTCAATAGAAG 456743 Query 110560 GTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGT 110618 |||| | ||| | |||||| || ||| | || ||||| | ||||| || ||| Sbjct 456744 GTATATTTGAAACA-TTAAAGCAATGTGCATTGATCAGTAAAACAGCAGGAGGTATAGGT 456802 Query 110619 ATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCA 110678 || || || |||||||| | || | |||| | | | || ||| ||| Sbjct 456803 GTTGCTGTACAAGATATTCGAGGACAAAATTCTTATATTAGAGGAACTAATGGTATATCA 456862 Query 110679 ACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT 110738 | ||| | ||||||||||||||||| || || || || |||| |||||| |||||||| Sbjct 456863 AATGGGTTAGTTCCAATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGGT 456922 Query 110739 GGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTT 110795 || || ||||| || || |||||| | ||| | || || ||||| || ||||| ||| Sbjct 456923 GGCGGAAAAAGAAAAGGTTCTTTTGCTGTATATATTGAGCCATGGCACTCTGATATTTTT 456982 Query 110796 GAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTT 110855 ||||| ||||| | | |||||||| || |||||| |||||| |||||||||||| Sbjct 456983 GAATTTTTAGATTTAAGAAAAAATCACGGTAAAGAAGAATTAAGAGCTCGTGATTTATTT 457042 Query 110856 TATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCT 110915 ||||| || ||| | | |||||||| ||||| | ||| |||||||| ||| || Sbjct 457043 TATGCTATATGGGTACCTGATTTATTTATGAAGAGGGTTAAAGAAAATAAACACTGGACT 457102 Query 110916 CTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGAC 110975 | ||||||||| || | ||| ||| || ||| | || |||| |||||| | Sbjct 457103 TTAATGTGTCCTAATGAATGTCCAGGTTTAAGTGAATCTTGGGGTGAAGAATTTGAAAAA 457162 Query 110976 CTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTCAAGAA 111032 | || |||||||||| ||||| || || | ||| ||| ||| || ||||| Sbjct 457163 TTATATACAAAATATGAAGAAGAA---AATTTAGGTAAAAAAACAGTTCTTGCACAAGAT 457219 Query 111033 CTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAA 111092 | ||||| || | || ||| |||||||||| || ||||| || |||||| Sbjct 457220 TTATGGTTTGCTATATTACAAAGCCAAATTGAAACTGGTGTACCATATATGTTATATAAA 457279 Query 111093 GAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTT 111151 ||| ||| |||| ||||||||||||| |||||||| |||||||| | ||||||||| Sbjct 457280 GATGCAT-GTAATTCTAAATCTAATCAAAAAAATTTAGGGACAATTAAATGTAGTAATTT 457338 Query 111152 GTGCTGTG 111159 || |||| Sbjct 457339 ATGTTGTG 457346 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || || |||||| || Sbjct 457466 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAA 457525 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || | || ||||| | |||||||| ||||| || || |||||||||||||| Sbjct 457526 GAAGCTGAAAAATCAAATAAAAGACATAGACCTATTGGAATAGGAGTACAAGGATTAGCA 457585 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| ||||| |||||| |||||| | Sbjct 457586 GATACATTTATGCTTTTAAGATATCCATATGAATCTGAGGAAGCTAAAGAATTAAATAGA 457645 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCT 112790 | || || ||||| || |||| |||||| Sbjct 457646 AGAATATTTGAAACTATGTATTATGCTGCT 457675 >seq11 Length=733468 Score = 131 bits (144), Expect = 4e-25 Identities = 390/584 (67%), Gaps = 36/584 (6%) Strand=Plus/Plus Query 58754 TCAATATGATTATGGTAAACGTGAGCATCTCCAATAATATGATGAACCAATCCAGGtttt 58813 |||| |||||||| ||||| ||||||| ||| ||||| ||| | ||| ||| | | Sbjct 125964 TCAACATGATTATTATAAACATGAGCATTTCC--TAATAC-ATGTATAAATTCAGCTGGT 126020 Query 58814 t-----ttCCTGTCTTTTTACACATTATATGAAGCAATACGGAGTATGAAACCATATTAA 58868 | || | ||| | | |||||| | |||| || || ||| | ||||||| Sbjct 126021 TGTAAATTACATACTTGTGCTATCATATATGTA--AATATAGAATAGGAAGCAATATTAA 126078 Query 58869 AAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTAGATTAAGAGTGTCAT 58928 | || | |||||| | ||||| | |||||||| | | || || | | | || Sbjct 126079 ATGGAACACCAAGACCTAAATCACAAGATCGTTGATACA-TAATACATGATAATTTTC-- 126135 Query 58929 CTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATAT 58988 | | |||||||||||||||||||||||||||||||| | |||||||| ||| | || Sbjct 126136 CATCAAAAACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAAT 126195 Query 58989 CACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAA-TAAGT 59047 | ||||||||||||||| |||||||| || | | | || |||||||||| ||| | Sbjct 126196 CTTTTACATTCCATGCACACAAAATAATTCGTCTACATGTCGGATCATTTTTAATTAAAT 126255 Query 59048 TCTTCACAATGTTTTATTTGGTCAAATCCATTA---GTATATTCAGTATTGGCATCAATG 59104 | | | || ||||| || |||| || ||| |||| |||| || ||| || Sbjct 126256 TGAT-AATATTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATACATATCTGTG 126314 Query 59105 TATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCC-AAG--AGTTCCTTCA 59161 |||| | | || | | | ||||||||| ||||| | || || ||| | | |||| Sbjct 126315 TATTCAGCACCAAAGTGTCTCCATTGAAATCCATAGATCGGCCCTAAGTCATTAACTTCT 126374 Query 59162 GGAT--ATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAAA 59219 || | | |||| | | || | ||| |||||||| |||| | ||||| | Sbjct 126375 CTATGAAATAATTT-----CCTATTATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATA 126429 Query 59220 TATGAACATTATTATCATTAAGAGATTTATT---ATCTGTTTTTCCAGATAGAAACCATA 59276 | ||||| || || ||| | || |||| || ||||| ||| || |||||||| Sbjct 126430 TTCTTACATTTTTTTC--TAATA-ATGTATTTCCATTTGTTTCTCCCCTTATAAACCATA 126486 Query 59277 ACAATTCCTTAATG-CAAATTTTCCAAGCAACtttttttGTTGT 59319 | || || | |||| | | || ||| || |||||||||||| Sbjct 126487 ATAACTCTTCAATGATACCTCTTACAAATAA-TTTTTTTGTTGT 126529 >seq4 Length=1653377 Score = 107 bits (118), Expect = 5e-18 Identities = 175/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 305264 AAACAATTCAGTAAAAT-GCTTGAA-ATTAATGATATTGTTATCAGACATTTGAATGACA 305321 ||| ||||||| ||| ||||||| || || ||| || |||||| ||| ||| Sbjct 309574 AAAAAATTCAGAAAAGGAGCTTGAATATGGAT-ATAAAGTAGAAAGACATATGACTGATG 309516 Query 305322 ATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATA 305381 | |||| | | || ||| | ||||||||| | ||||||||| ||| |||| |||| Sbjct 309515 AAGATTATATATTATTTAATCGACAACCATCATTACATAAAATGAGTATTATGGGGCATA 309456 Query 305382 AAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 ||| ||| |||| || | || ||||| |||||| || || | | || |||| Sbjct 309455 AAGCAAAAATATTGCCTTATTCTACCTTTCGTTTAAATTTAGCTGTAACTTCACCATATA 309396 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGA 305501 |||| |||||||| || ||||||||||| ||||| || |||||||| | | |||| Sbjct 309395 ATGCCGATTTTGACGGTGATGAAATGAACTTGCATTTAGCTCAATCACATGAAACAAGAT 309336 Query 305502 CTGAATTA 305509 ||||| || Sbjct 309335 CTGAAATA 309328 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| |||||||||| |||| || | | ||||| | | Sbjct 308240 ATAGATCATTACCACATTTTATTAAATTTGATTATGGGCCCGAAAGTAGAGGATTTGTGT 308181 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 | | ||| |||||| || ||| | || ||| ||| |||||||| || | || Sbjct 308180 CGAATTCTTATTTAAGT--GGGCTAACACCACAAGAAGTCTTTTTTCATGCTATGGGAGG 308123 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| ||| || | ||||||| | ||||||| Sbjct 308122 TAGAGAAGGTATTATTGATACTGCTTGTAAAACATCAGAAACTGGTTATATACAAAGAAG 308063 Query 306427 ATTAATGAAA 306436 |||||| ||| Sbjct 308062 ATTAATTAAA 308053 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAA 167298 |||| | | | || |||||||| |||||| |||||| || || ||||||| ||||| Sbjct 1203808 TCATCATAGCCCCTGCATTATCAAATTCACCACAATAATTGGGAGCAGAAAATAAAGTAA 1203867 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGC 167350 |||||| | || ||| ||||||||||||||||| ||||||| ||| || Sbjct 1203868 CTAATTGTCTTTTTGCAAAAAATTCATAACCATCTTCTACAACTTGATGTGC 1203919 >seq1 Length=2470179 Score = 96.9 bits (106), Expect = 8e-15 Identities = 116/157 (74%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| |||||||| | ||| ||||| || ||| |||||||| ||| Sbjct 1720694 TTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTCATAAAGCTCGAGT---- 1720639 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| |||| || |||||||| || || Sbjct 1720638 TATGGATTATAAAACATTTCGTTTTAATGAATGTGTATGTAGTCCATATAATGCAGACTT 1720579 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||||||||||| |||||| | |||||||||||| || Sbjct 1720578 TGATGGAGATGAGATGAATTTACATGTACCTCAAACA 1720542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812054904089