Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq8 138 7e-28 seq5 102 5e-17 >seq8 Length=956651 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| || | ||| || ||||||| || ||||||||||| || ||||| || Sbjct 415512 ACCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGA 415453 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | | | || || ||||||||||| |||||||| || | |||||||| | || Sbjct 415452 TAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 415393 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| || || ||||| || | || || || ||| | Sbjct 415392 GATACCTTCTTTATCTTGAATTTT-TGCTTTAACATTTTCAATAGTATCAGATGGTTCGA 415334 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| ||||| |||||||| |||||||| || || |||||| Sbjct 415333 CATCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCATA 415284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||||||||| || || || | ||| | | || || ||||||||||| |||||| Sbjct 414849 TCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAA 414790 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || || | |||||||| | || | ||||||||| || |||||| || || ||||| Sbjct 414789 ATTAATCTTTGCTGATCAGGTGGAATACCTTCTTTATCTTGAATTTT-TGCTTTAACATT 414731 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || | || || || ||| || |||| ||||| ||||| |||| Sbjct 414730 TTCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCCTG 414684 >seq5 Length=1684710 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||||| || |||||||| ||||| || || || | || | | || || Sbjct 156744 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 156685 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||||||||| |||||||| || | || ||||| | || | |||||||| || Sbjct 156684 AATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 156625 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| || || ||||| || | || || || ||| || |||| || || ||||| Sbjct 156624 ATTTT-TGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTT 156566 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| |||||||||||||| ||||| Sbjct 156565 TCCGGTTAATGTTTTTACAAAGATTTGCAT 156536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703803702080