Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 8e-15 seq5 89.7 1e-12 >seq8 Length=956651 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | ||||||||||| |||||| | || || ||| ||||| || | ||| Sbjct 415300 AAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCTGATACTATTGAAAAT 415359 Query 206245 G-TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 | |||||||||| |||||||| |||||||| || || || |||||| | || || Sbjct 415360 GTTAAAGCAAAA-ATTCAAGATAAAGAAGGTATCCCACCTGATCAGCAAAGATTAATTTT 415418 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || || ||||||||||| || || | ||||| || | || ||||| || Sbjct 415419 TGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAATATACAAAAAGAATC 415478 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || | || | ||||| ||| Sbjct 415479 AACATTACATTTAGTTTTAAGA 415500 >seq5 Length=1684710 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || ||| | || || ||| || || ||| | ||| Sbjct 156551 AAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCAGATACAATTGAAAAT 156610 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| || ||||| |||||||||||| || || |||||| | || || Sbjct 156611 GTTAAAGCAAAA-ATCCAAGATAAAGAAGGAATTCCCCCTGATCAACAAAGATTAATTTT 156669 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || || |||||||| || ||||| | || || ||| | || ||||| || Sbjct 156670 TGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTATAACATTCAAAAAGAATC 156729 Query 206364 TAC 206366 || Sbjct 156730 AAC 156732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820058038129