Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq8 170 2e-37 seq5 125 6e-24 >seq8 Length=956651 Score = 170 bits (188), Expect = 2e-37 Identities = 185/243 (76%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || |||||||||||||| |||||| | ||||| | || |||||| ||| | Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAA-CCATC 415343 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| ||||||| |||||||| ||||| || || ||||| Sbjct 415344 TGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 415403 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||| | |||| | || |||||| | ||||||| |||| | ||||| || Sbjct 415404 GCAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAA 415463 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCATT 25413 ||| ||||||||||| || | |||||||| |||||||| |||||||| | |||||| Sbjct 415464 TATACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGGTTGCTAATCATT 415523 Query 25414 CGA 25416 ||| Sbjct 415524 CGA 415526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 178/255 (70%), Gaps = 11/255 (4%) Strand=Plus/Minus Query 137796 TTTAAATTTTTCGCCCATAACAATCG-TTAGACCCGGACACTCGTCGGGACACATCAACG 137854 || ||||| ||| ||| || | || ||| ||| ||||| || | |||||||| || | Sbjct 457159 TTCAAATTCTTCACCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAG 457101 Query 137855 ACCATT--TTCCTCCCGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAA 137912 ||| | || | | | ||||||| | ||| || | | ||| |||||||||| | Sbjct 457100 TCCAGTGTTTATTTTCTT--TAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATA 457043 Query 137913 AAGAAGGTCGCGAGC-CTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaag 137971 || | || ||||| ||| || ||||| || ||| | ||||||| ||||| Sbjct 457042 AAATAAATCACGAGCTCTTAAT-TCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATT 456984 Query 137972 taaaaaTATCAGCATGCCAAGGCTCGATATAGACGGCCATAGCTCCTTTTCTTTTACCG- 138030 ||||||||||| ||||| ||||| ||||| || || | || ||||||||||| ||| Sbjct 456983 CAAAAATATCAGAGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGC 456924 Query 138031 --CCTTGATCCACAT 138043 |||||||| |||| Sbjct 456923 CACCTTGATCTACAT 456909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAA 25260 |||||| | ||||| | || |||||| ||| | |||||||| || | || ||| ||| Sbjct 414686 GGAAAAACAATCACTCTTGATGTCGAA-CCATCTGATACTATTGAAAATGTTAAAGCAAA 414744 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 |||| |||||||| ||||| || || |||||||||||| | |||| | || ||||| Sbjct 414745 AATTCAAGATAAAGAAGGTATTCCACCTGATCAGCAAAGATTAATTTTTGCTGGAAAACA 414804 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGA 25365 | | ||||||| |||| | || || || || |||||||| Sbjct 414805 ATTAGAAGATGGCAGAACATTATCTGACTATAACATACAAAAAGA 414849 >seq5 Length=1684710 Score = 125 bits (138), Expect = 6e-24 Identities = 165/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 |||| ||| | || |||||| | |||||||||||||||||||||||| | || || | Sbjct 156520 TTTTACATTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCT 156579 Query 25219 CGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGG 25277 || || ||| ||| | ||||| || || | || ||| |||||| |||||||| | Sbjct 156580 TGATGTTGAA-CCATCAGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAG 156638 Query 25278 GTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 25337 | || || || ||||| |||||| | |||| | || |||||| | ||||||| |||| Sbjct 156639 GAATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAA 156698 Query 25338 ATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | | || || || |||||||||||||| ||| | ||||| || Sbjct 156699 CTTTATCTGACTATAACATTCAAAAAGAATCAACCTTACATTTGGT 156744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094127379680