Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8 517 2e-141 seq4 246 4e-60 >seq8 Length=956651 Score = 517 bits (572), Expect = 2e-141 Identities = 1042/1525 (68%), Gaps = 33/1525 (2%) Strand=Plus/Minus Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| ||||| || | |||||| ||| ||| || | | | ||||| ||||| || Sbjct 457981 ATGGGGATTGACAACAAAAAATTCACCACTTAAAACACGTCTATAATAAATGTTACTTGT 457922 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 ||||||||| | |||||||||||||| | |||||| | |||||| || ||||||||||| Sbjct 457921 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 457862 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCA 68882 ||| | | | | |||||| | ||||| | | ||||| | ||||| | ||| Sbjct 457861 TGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCA 457802 Query 68883 ATCCCAAAGATCAGATGGTACAA---CATTCCAAAGATCGTATTGTAGAATTCCGTTACT 68939 ||||||| | | ||| ||||||| | ||| |||||| ||||| || || Sbjct 457801 ATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTGCT 457742 Query 68940 TGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA--CAACTT 68997 ||| || | ||||| |||||| || || | || |||| |||| | || | Sbjct 457741 TGCTGGACTACCTTGATATGATTCATATGGGCCATTTACTTGTGCTAATTCAACCGACAT 457682 Query 68998 GCCTCTAATGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGCTTC 69056 ||||| ||| | ||||| || ||||| || || ||||| ||| | |||| ||||| Sbjct 457681 T--TCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGCTTC 457625 Query 69057 TAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAAT 69116 | || ||||||| |||||| ||||||| |||||| ||||| || || || || Sbjct 457624 CTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTAT 457565 Query 69117 ACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAAT 69176 || |||||||||||||| |||||||| ||||||||||| ||| || |||||||| | Sbjct 457564 TCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAATTTCT 457505 Query 69177 ATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG-TCCTTTAGTTTGAGAA 69235 || |||||||||| | ||||| | || || ||| | | || | || ||| || Sbjct 457504 TTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCGTATAATTTTTTAA 457446 Query 69236 AATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 ||| |||| | | |||| |||||| || | ||| | || |||||||||| Sbjct 457445 AATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGATTAC 457386 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 |||| ||||| |||| || || ||||| || || || ||||| ||||||||||| Sbjct 457385 AAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTACATT 457326 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAA 69409 | || ||||| | ||||| |||||| || ||||| || || || || | ||| Sbjct 457325 TAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATATAACATAT 457266 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT- 69468 | || |||||||||||| || | || | ||||| | ||||| | | | | | Sbjct 457265 ATGGTACACCAGTTTCAATTTG-GCTTTG-TAATATAG---CAAACCATAA-ATCTTGTG 457212 Query 69469 --ATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATT 69523 | || || || | || || |||| |||||||| |||||||| ||| |||| Sbjct 457211 CAAGAACTGTTTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTCAAATT 457152 Query 69524 CATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACAT 69583 | || |||||| ||| || || ||||||||||| |||||||| || | ||| | Sbjct 457151 CTTCACCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTGTT 457092 Query 69584 CATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTC 69643 || || ||||| | |||||||||| ||| || | ||| | ||| ||| | ||| | Sbjct 457091 TATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAAATCAC 457032 Query 69644 TGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 | ||| |||||| || || ||||||| | | ||| | ||| || | |||||||| Sbjct 457031 GAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATATCAG 456972 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 | |||||||| || | ||||| || | || || ||| || || ||||||| Sbjct 456971 AGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTGATCTA 456912 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 ||||| || || | |||| | ||||| | ||| |||| | ||||| ||| |||||| Sbjct 456911 CATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATATACCAT 456852 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTC 69883 | ||||| ||||||| | | | ||||||| | || | |||||| |||| Sbjct 456851 TAGTTCCTCTAATATAAGAATTTTGTCCTCGAATATCTTGTACAGCAACACCTATACCTC 456792 Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTAT 69943 |||| ||||| ||| | ||||| | || ||||| ||| ||||||| ||||| || Sbjct 456791 CTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAAT 456732 Query 69944 CATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTA 70002 || | |||| | ||| || |||||| ||||||||| | | ||||||| |||| Sbjct 456731 CAGATTTCATTGATAATAA-AAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTA 456673 Query 70003 AATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATA 70062 ||||||||||||| || ||||| || |||||| ||| | | || ||| ||||| | | Sbjct 456672 AATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGTTTCTAAA 456613 Query 70063 GCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 ||| ||| ||||| || | ||| |||||||| | || | ||| || | ||| ||||| Sbjct 456612 GCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCATTAATAAATGTTGAGG 456554 Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181 ||||| | |||||||||| || || | ||| || | || | |||||||| || Sbjct 456553 ACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTCTAATGTTTTAAATCC 456494 Query 70182 AAAATAGTTGTATGAAAAGTCTCTT 70206 |||||| | || ||| |||||| Sbjct 456493 AAAATAATCATAATTAAAATCTCTT 456469 >seq4 Length=1653377 Score = 246 bits (272), Expect = 4e-60 Identities = 389/552 (70%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 |||| || ||||| |||||||||||||| ||| |||||| | ||| | | | | Sbjct 1529445 TGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTT 1529386 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 | ||||| | ||||||||| ||| |||| |||| ||| || || ||||| || | Sbjct 1529385 TGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACAT 1529326 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATCCACTTCTGTGCC 39808 ||| || |||| ||| || | || |||||||||| ||||| || |||| Sbjct 1529325 GCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTG---ATCCATTTAGCTGCC 1529269 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT--AA--TG 39864 || ||||| || |||| || || |||| ||||||| ||| | || || | Sbjct 1529268 CATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAACCTC 1529209 Query 39865 TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGAT 39924 | |||| ||| || |||| ||| |||| ||||| | |||||| |||| ||||| || Sbjct 1529208 TCTTTC-TCA---TCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTAT 1529153 Query 39925 GTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGA 39984 ||||||| || || ||||| ||||| | | |||||| | |||||||||||| Sbjct 1529152 ATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTGTACCTCTCT 1529093 Query 39985 ACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAA 40044 ||||| | ||||||||||| ||||||||||||||||| ||||||||||| || Sbjct 1529092 TAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAA 1529033 Query 40045 TACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTT 40104 |||||||| ||||||| |||||||| | ||||| | |||| || | ||| | Sbjct 1529032 CACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACT 1528973 Query 40105 TGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCA 40164 ||||| ||||| |||||||| |||||||| || || || || ||||| || | ||||| Sbjct 1528972 TGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCA 1528913 Query 40165 TATATCACGATA 40176 || ||| |||| Sbjct 1528912 TACCTCAGGATA 1528901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908379268360