Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10 217 1e-51 seq4 190 2e-43 seq11 152 4e-32 >seq10 Length=766960 Score = 217 bits (240), Expect = 1e-51 Identities = 392/571 (69%), Gaps = 19/571 (3%) Strand=Plus/Plus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTT 19416 ||||| || || ||| ||| ||||||||||| || ||| || | ||||| ||| | Sbjct 710965 TATGGTCCTCCTGGTACTGGTAAAACATTAATAGCTAGACAAATAGGTAAAACATTAAAT 711024 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 ||| | ||||| |||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 711025 GCAAGAGAACCT---AAAATTATAAATGGGCCTGAAATATTAAATAAATATGTAGGTCAA 711081 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 || ||||||||| | || ||| ||| || |||||| ||| | |||| | || Sbjct 711082 TCTGAAGAAAATATTCGTAATTTATTTAAAGAGGCTGAATTGGAATATAAACAATCTGG- 711140 Query 19537 CGCAAAAGT--TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 |||| | | || || ||||||||| ||||||| | || ||||| ||| |||| Sbjct 711141 -TGAAAATTCATTATTACATATTATAATATTAGATGAGATAGATGCAATTTGTCGACAAA 711199 Query 19595 GAGGT---------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645 ||||| ||| ||| | || ||| |||| | | | || || ||| | | | Sbjct 711200 GAGGTAGTTCTGCATCTAGTGGGACAGGTGTAAATGATAGTATAGTTAACCAATTATTAT 711259 Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705 ||||| |||| || || || | |||||||| || | ||||| ||||| |||||| Sbjct 711260 CAAAAATAGATGGAGTAAATAGTTTAAATAATATACTATTAATTGGAATGACAAATAGAA 711319 Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765 | || ||||| || || |||||| |||| ||| | || ||| || | || ||||| Sbjct 711320 TAGATTTAATTGATGAAGCATTATTAAGACCAGGTAGATTTGAATTACATATTGAAATAT 711379 Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGAC 19825 ||||| || || || | | |||| ||||| || |||||| || ||| ||| Sbjct 711380 CATTACCAAATAAAGAAGGTAGAATTCAAATATTAAATATTCATACAAAAAATATGAGAC 711439 Query 19826 AAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 ||||||| |||| | | ||||| || ||||||| | |||| || ||||| Sbjct 711440 AAAATAATAAATTAAGTAAAGATGTTAATATAGAAGAGTTGGCAGAAAAAACTCCAAACT 711499 Query 19886 ATAGCGGCGCAGAACTTGAGGGATTAGTGAG 19916 | || |||||| |||| |||||||| || Sbjct 711500 TTTCAGGTGCAGAAATTGAAGGATTAGTAAG 711530 >seq4 Length=1653377 Score = 190 bits (210), Expect = 2e-43 Identities = 564/861 (66%), Gaps = 23/861 (3%) Strand=Plus/Plus Query 43721 TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAA 43780 |||| ||| ||||| | | || |||||||| | || ||||||||||| || ||||| Sbjct 1528901 TATCCTGAGGTATGGAATTTTTATAAAAAAGCTGAAGCCTCATTTTGGACTGCTGAAGAG 1528960 Query 43781 GTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATT 43838 | ||||| | | || || | || ||| | |||||| | | |||||||||| Sbjct 1528961 ATAGATTTATCAAGTGATTTGAAAGACTTTGAAAA--ATTAAATGTAAATGAAAAACATT 1529018 Query 43839 TTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898 ||||| || || || |||||||| || || || || ||||| |||||||||| Sbjct 1529019 TTATAAAACATGTGTTAGCATTTTTTGCAGCTAGTGATGGAATAGTATTAGAAAATTTGG 1529078 Query 43899 TTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAA 43958 |||| ||| ||| || ||| || ||||| | |||||| ||||||| Sbjct 1529079 CTAGTAAATTTTTAAGAGAGGTACAAATAATTGAAGCCAAAAAATTTTATTCTTTTCAAA 1529138 Query 43959 TTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAG 44018 | || | |||||||| ||||| |||| || ||| | | || |||| || || || | Sbjct 1529139 TAGCTGTTGAAAATATACATTCTGAAACATATAGTTTATTAATTGATAATTATATTAAGG 1529198 Query 44019 ATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATA 44078 ||| | | |||| | || ||| |||| || |||| |||| || || ||| ||| Sbjct 1529199 ATGAGAAAGAGAGGTTAAATTTATTTCATGCTATTGAAAATATACCAGCAATAAAAAATA 1529258 Query 44079 AAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCG 44138 ||||| ||||| ||||||||| ||| | ||||||||| ||| || |||| | Sbjct 1529259 AAGCATTATGGGCAGCTAAATGGATCAATGATACAAATTCTTTTGCTGAAAGAATTGTAG 1529318 Query 44139 CGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAA 44198 | |||| ||| ||||| || || ||| ||| ||| || ||||||||||| | Sbjct 1529319 CTAATGCATGTGTCGAAGGAATATTATTTAGTGGAAGTTTTTGTGCAATATTTTGGTTTA 1529378 Query 44199 AGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAG 44258 | |||| | | | | ||| || || ||| ||||| ||||| ||| | ||||||| Sbjct 1529379 AAAAACAAAATAAATTACATGGTTTAACATTTAGTAATGAATTAATTAGTAGGGATGAAG 1529438 Query 44259 GCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAG-GAGACGATAAGCCTTCA 44317 | ||||| ||||||| ||| ||| || ||| || | ||| |||| || Sbjct 1529439 GATTACACACCGATTTTAATTG---TTTAATT-TATAGCTTGTTAGAAAATAAATTACCA 1529494 Query 44318 TGTAAGACAATTACAGATATTGTTGTAGAGGCAGT--AA--AGATAGAACAAGAATTTAT 44373 || || | |||| ||| ||| ||||| || ||| ||| || |||| | Sbjct 1529495 GAAGAGGTTGTTCAAAATATAGTTAAAGAAGCAGTTGAAGTAGAAAGATCATTTATTTGT 1529554 Query 44374 GACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATAT 44433 || | | |||||| ||||||| ||||||||| | | ||| |||||||| Sbjct 1529555 GA----ATCTTTACCTTGTGATTTAATTGGAATGAATTCAAGACTTATGTCTCAATATAT 1529610 Query 44434 TGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGATAAACACTATATTGT 44490 |||| |||| ||||| ||| || ||| | ||||| |||| | | Sbjct 1529611 CGAATTTGTTGCTGATCGATTA---TTAGAATGTTTAGGTTGTTCTAAAGTTTTCCATTC 1529667 Query 44491 ACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGA 44550 | |||| || ||| || ||||| || ||||| |||| |||||||| || ||||| Sbjct 1529668 AAAAAATCCATTTAGTTGGATGGACTTAATATCGTTACAAGGAAAAACAAATTTCTTTGA 1529727 Query 44551 AAAACGCGTTGGAGAATATCA 44571 ||| | |||| ||| ||||| Sbjct 1529728 AAAGAGAGTTGCAGATTATCA 1529748 >seq11 Length=733468 Score = 152 bits (168), Expect = 4e-32 Identities = 266/382 (70%), Gaps = 4/382 (1%) Strand=Plus/Minus Query 40884 TATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACA-CTATGTACTCTGATTATAC 40942 ||||||||||| | | |||| ||||| || |||| ||| |||||| ||||||||| Sbjct 126349 TATGGATTTCAATGGAGACACTTTGGTGCTGAATA-CACAGATATGTATGCTGATTATAA 126291 Query 40943 CAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATA- 41001 ||||||| | ||||| ||| | |||| || |||||| ||| |||| | Sbjct 126290 AGATAAAGGTGTTGATCAGTTAAAAAATATTATCAATTTAATTAAAAATGAT-CCGACAT 126232 Query 41002 GCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCAC 41061 | |||| || || ||||| || ||||| || || || || |||||||| || | Sbjct 126231 GTAGACGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTC 126172 Query 41062 CTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATC 41121 |||||||| | |||||||| ||||| |||| |||| || | |||||| |||||| Sbjct 126171 CTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATCATGTATTATGTATC 126112 Query 41122 AAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCA 41181 || |||| |||| | || || || || || ||||| || || ||| || | | | Sbjct 126111 AACGATCTTGTGATTTAGGTCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTA 126052 Query 41182 CGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAG 41241 | |||||||| ||||| || |||||| |||| | ||||||| | || |||||| Sbjct 126051 CATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTTATACATGTATTAGGAA 125992 Query 41242 ATGGACATATTTACATTAATCA 41263 ||| ||| |||| | |||||| Sbjct 125991 ATGCTCATGTTTATAATAATCA 125970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455762644245