Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq8 131 1e-25 seq5 104 2e-17 >seq8 Length=956651 Score = 131 bits (144), Expect = 1e-25 Identities = 806/1281 (63%), Gaps = 37/1281 (3%) Strand=Plus/Minus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 || ||||| ||| | || | ||| |||||||| || | || |||| | ||| || ||| Sbjct 458172 TGGTCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCC 458113 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTA 130675 ||| | || || || | || | | || | ||||| ||| |||| || || Sbjct 458112 CAAACTGTTTTATACAATTCTTTCAAGTCACTAGGTATTTCACTAATATATTGGACACTT 458053 Query 130676 CCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAAG 130734 || || | ||| || | || |||| |||| || ||| | | || | | ||| Sbjct 458052 CCATTATGGGCAATTAATT-GTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAAAAG 457994 Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||||||| ||||| ||| | | ||| |||||| | || |||||| || Sbjct 457993 ATCTTTTAATAAATGGGGATTGACAACAAAAAATTCACCACTTAAAACACGTCTATAATA 457934 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 |||||| || || | |||||||||||||| || || || || ||||||| || | || Sbjct 457933 AATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGC 457874 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT 130914 || ||||| ||| | | |||||||| | | || ||| | | |||||| || Sbjct 457873 TGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTT 457814 Query 130915 CAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---GTTCCACATATCAAATTG 130971 ||| |||||||||||| | | || | || || ||||||||||||||||| Sbjct 457813 TAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 457757 Query 130972 TAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAGC 131031 || ||| ||||| || || ||||| || | ||||| || || | || | || Sbjct 457756 TAATATTCCTTTGCTTGCTGGACTACCTTGATATGATTCATATGGGCCATTTACTTGTGC 457697 Query 131032 CAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAA 131091 | || ||| ||||| | ||||| || ||||| ||| | ||||||| Sbjct 457696 TAATTCAACCGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAA 457637 Query 131092 TTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACC 131151 || ||| |||| | || || ||| || | | | ||||| | ||||| | || Sbjct 457636 TTCTTTAGCTTCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCC 457577 Query 131152 CTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGTGGG 131211 |||| || | || | ||||||||| || ||| |||| | || | || Sbjct 457576 TTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGG 457517 Query 131212 ATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTT 131271 ||| || | ||||| ||||| | |||||| | | ||||| || | | Sbjct 457516 GTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCGTA 457457 Query 131272 CAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGA 131331 ||||| | |||| ||| |||| | ||||||| | || ||||| Sbjct 457456 TAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGA 457397 Query 131332 CGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGCGCAC 131389 || ||||||||||| || ||| ||| | || ||| | || |||||| || Sbjct 457396 AGCTAGATTACAAACAGCTACTTCATCAGGTGAT--GTATATTCAATAATTTCACAACAT 457339 Query 131390 AAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTC 131448 |||||||| | || || || || ||||||| |||||| ||||| ||| ||||| || Sbjct 457338 AAATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATT-ACATGCATC 457280 Query 131449 CTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AG 131506 || || | ||| || || || ||||| | ||| ||| |||| || | || | Sbjct 457279 TTTATATAACATATATGGTACACCAGTTTCAATTTGGCTTT--GTAATATAGCAAACCAT 457222 Query 131507 AGTTTTCGAGCAGACAATTGATATT-----TGTATTGGCCGCGTTTTTCGTAATTTTCGT 131561 | | | | ||| | || || | || | ||| | || ||| || ||| | Sbjct 457221 AAATCTTGTGCA-AGAACTGTTTTTTTACCTAAATTTTC----TTCTTCATATTTTGTAT 457167 Query 131562 ACAACGTTTCAAAGTTTTGGCCAAACGA---ACTGTCCAAATTGGGACATTCGCTGGGAC 131618 | || ||||||| | || || | || ||| ||| |||||||| | |||| Sbjct 457166 ATAATTTTTCAAATTCTTCACCCCAAGATTCACT---TAAACCTGGACATTCATTAGGAC 457110 Query 131619 ACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATA 131678 |||||| | ||| || | || ||| | ||||||||| ||||| || ||||||| Sbjct 457109 ACATTAAAGTCCAGTGTTTATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATA 457050 Query 131679 ACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTA 131738 || || || | ||| | |||| || |||||| |||| | ||||| | |||| || Sbjct 457049 TAGCATAAAATAAATCACGAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTA 456990 Query 131739 AAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCT 131798 |||| || ||||| || | ||||| || || | ||| || || | | ||||| | | Sbjct 456989 AAAATTCAAAAATATCAGAGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTT 456930 Query 131799 TACCG---CCTTGATTAACAT 131816 | ||| ||||||| |||| Sbjct 456929 TTCCGCCACCTTGATCTACAT 456909 >seq5 Length=1684710 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || ||||||||||| || ||||| | | | ||| || | |||| Sbjct 156745 TACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGC-CATCTT 156687 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | ||||| || || |||| | | |||||||| || || | || |||||||| Sbjct 156686 CTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTT 156627 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||| || ||| | |||| | || |||| | |||||| || ||||| || | || Sbjct 156626 GGATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTT 156567 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 156566 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 156536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934146234488