Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq8 156 5e-33 >seq8 Length=956651 Score = 156 bits (172), Expect = 5e-33 Identities = 821/1293 (63%), Gaps = 22/1293 (2%) Strand=Plus/Plus Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 ||| || || || || | || ||| | || |||||||||||||||||||| || || Sbjct 456652 TCATGCTACTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAATGTCTTCATGTTT 456711 Query 104380 CCTTATCGCCAAC-AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTG 104438 |||| ||| || || ||||| | ||||| | || ||| | | | | |||| Sbjct 456712 T-TTATTATCAATGAAATCTGATTCAATAGAAGGTATATTTGAAACATTAAAGCAATGTG 456770 Query 104439 CGCAAATCTCAAAGTGGGCTGGGGGTATTGG-GATGCACATCCATGATGTGAGAGCCAAT 104497 | ||| || || || ||||| || | ||| | || ||| | ||| | Sbjct 456771 CATTGATCAGTAAAACAGCAGGAGGTATAGGTGTTGCTG-TACAAGATATTCGAGGACAA 456829 Query 104498 AAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 104557 || ||| |||| | || || |||||| |||| |||| | |||||||| | | || Sbjct 456830 AATTCTTATATTAGAGGAACTAATGGTATATCAAATGGGTTAGTTCCAATGTTAAGAGTT 456889 Query 104558 TTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCA 104614 ||||| | ||||| | |||||| |||||| ||| | |||| || ||| | || Sbjct 456890 TTTAATGATACAGCAAGATATGTAGATCAAGGTGGCGGAAAAAGAAAAGGTTCTTTTGCT 456949 Query 104615 GTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA 104674 || ||| |||||||||||||| | ||||| | || || | || || | || || Sbjct 456950 GTATATATTGAGCCATGGCACTCTGATATTTTTGAATTTTTAGATTTAAGAAAAAATCAC 457009 Query 104675 GGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTC 104734 ||| | || || | || ||| | || | ||| | ||| | || ||| | || Sbjct 457010 GGTAAAGAAGAATTAAGAGCTCGTGATTTATTTTATGCTATATGGGTACCTGATTTATTT 457069 Query 104735 ATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGT 104794 |||||||| ||| | || | | | ||| || | | ||||| | | || ||| Sbjct 457070 ATGAAGAGGGTTAAAGAAAATAAACACTGGACTTTAATGTGTCCTAATGAATGTCCAGGT 457129 Query 104795 CTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGT 104854 | || | |||||| || |||||| | || ||||| || || |||||| | Sbjct 457130 TTAAGTGAATCTTGGGGTGAAGAATTTGAAAAATTATATACAAAATATGAAGAAGAAAAT 457189 Query 104855 CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAAC 104913 | | || || | || ||| | ||| ||||| | ||| | |||| Sbjct 457190 TTAGGTAAAAAAACAGTTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGC-CAAAT 457248 Query 104914 CGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAA 104973 || |||||| |||||| ||| | || ||||| || ||||| || ||||||||| Sbjct 457249 TGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCTAATCAAAA 457308 Query 104974 GAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAA 105033 ||||| || || || || ||| | ||| ||||| | |||| |||| Sbjct 457309 AAATTTAGGGACAATTAAATGTAGTAATTTATGTTGTGAAATTATTGAATATACATCACC 457368 Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 ||||| ||||| ||||| || || ||||| || | || | ||| ||| ||| Sbjct 457369 TGATGAAGTAGCTGTTTGTAATCTAGCTTCAATTGCATTATGTAAATTTGTTGATAGAGA 457428 Query 105094 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153 | ||| |||| ||| | ||||| | |||| |||| |||| | | || | ||| | Sbjct 457429 AAAAAAAGAATTTAATTTTAAAAAATTATACGATATTACTAAAATTATTACTAGAAATTT 457488 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 | | | | ||||||| ||||||| |||||| || | ||| ||||| |||| || Sbjct 457489 AGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGCTGAAAAATCAAATAAAAG 457548 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCA 105273 ||| | || ||||| | || || || || | || ||| ||| || |||| | | Sbjct 457549 ACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGATA 457608 Query 105274 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 ||| ||| || || ||||| || ||| | ||| | |||||||| || |||||| | Sbjct 457609 TCCATATGAATCTGAGGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATTA 457668 Query 105334 CGCCGCTCTTGA---GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 105390 || ||| | || | || ||| || || ||| | || |||| ||||||||| | | Sbjct 457669 TGCTGCTTTAGAAATGTCG-GTT--GAATTAGCACAAGTAAATGGCCCATATGAATCATA 457725 Query 105391 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA- 105449 | | ||| |||||| |||| | | ||||||||||||| |||| | | | | Sbjct 457726 TCAAGGTAGTCCAGCAAGCAAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAG 457784 Query 105450 AGCTTCACTA---CGACTGGGAAGCTCTCAAGGAACGCATCAAGGA-GAAGGGTCTTCGT 105505 | | | || || |||| | | | || || | ||| | | | || | | Sbjct 457785 ATAATAAATATTGGGATTGGG-ATTTATTAAAAAAAAAAATAAGTATGCATGGATTAAGA 457843 Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 || ||| || | || || ||||||||||| || || ||||||| || || |||||| Sbjct 457844 AATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAATTTTAGGAAATAAT 457903 Query 105566 GAATGCTTTGAACCCTACACGACGAACATCTAT 105598 |||| ||||||||| || || | ||||| ||| Sbjct 457904 GAATCCTTTGAACCATATACAAGTAACATTTAT 457936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260442752760