Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq11 125 6e-24 >seq11 Length=733468 Score = 125 bits (138), Expect = 6e-24 Identities = 268/392 (68%), Gaps = 9/392 (2%) Strand=Plus/Plus Query 111721 TGATTTAAATAAACATGCGCATCTCCTA-TACAATGGATCAATTCCCAAGGCTCCAAACC 111779 ||||| ||||||||| |||| ||||| |||| || || ||||| || | ||| Sbjct 125970 TGATTATTATAAACATGAGCATTTCCTAATACA-TGTATAAATTCAGCTGGTTGTAAATT 126028 Query 111780 AGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACC 111839 | | ||||| ||||| ||||| | || | || |||||| |||||||| ||||| Sbjct 126029 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTAAATGGAACACC 126088 Query 111840 TAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATA 111899 || || | ||| | |||| |||||| | |||||||| ||| | | ||||| Sbjct 126089 AAGACCTAAATCACAAGATCGTTGATACATAATACATGATAATTTTCCATCAAAAACATA 126148 Query 111900 AAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATAAAGGGTCC---CCA 111956 ||||||||| | | |||||||||||| |||||||| || | | | | ||| Sbjct 126149 AAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCA 126208 Query 111957 TGCACACATGATCATCCTTCTGC-TGTAGCGATTATGTTCAATGTCGTGTATGACATTCA 112015 |||||||| || || | ||| | ||| | ||| || || ||| | || | ||| Sbjct 126209 TGCACACAAAATAATTCGTCTACATGTCG-GATCATTTTTAATTAAATTGATAATATTTT 126267 Query 112016 AGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATC-CAGTGTATGTTGCCCCA 112074 | ||| || | |||||| | ||||||| || | |||| | |||||| || ||| Sbjct 126268 TTAACTGATCAACACCTTTATCTTTATAATCAGCAT-ACATATCTGTGTATTCAGCACCA 126326 Query 112075 TAGTGTCTCCATTGGAATCCATAAATAGGCCC 112106 ||||||||||||| |||||||| || ||||| Sbjct 126327 AAGTGTCTCCATTGAAATCCATAGATCGGCCC 126358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391945365934987