Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq4 109 3e-19 >seq4 Length=1653377 Score = 109 bits (120), Expect = 3e-19 Identities = 200/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 65093 CCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCC 65152 ||||| || ||| ||| ||| ||||| ||||||||||| |||| ||| | |||||| Sbjct 589861 CCAAATTGTCCACATGGTTCTAAAAAATTTATATTGTTTGACCCAACAAATGTTTGAGCC 589802 Query 65153 ATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAG 65212 || ||||| | | | || | |||||| ||||| ||| | |||||| | Sbjct 589801 ATATTTATAATAGTTTGTTGTAGTGATGATTCACCATGATGGTATGCACTATGTTCTGCA 589742 Query 65213 ACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAA 65272 | ||| || || ||| |||||||| ||| || |||||| ||||||| | | Sbjct 589741 ATATAACCTACAAGTTGTGCAACTTTACATTCGTTTCGTAAATTTCTTTTAAAACAACCA 589682 Query 65273 TACAATATTTTCCGTAAACTAATTTTCAATCCATCCATTAAATTAGGAATGCTTCTGTCA 65332 || || | ||| | | | | |||| |||||||||| | ||| || || ||||| || Sbjct 589681 TATAAAACTTTTCTTTGTCCAGGTTTCCATCCATCCATAATATTGGGTATACTTCTTTCT 589622 Query 65333 CAATCATATTTTGAGAAATGTATGAATTCTTTGTTAATAAATTCTTCATATGA 65385 ||||||| | || ||| ||| |||||||| || | ||| || | |||||| Sbjct 589621 GTATCATATCTAGAATAATATATTAATTCTTTATTTACAAAATCATAATATGA 589569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235679859254850