Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 3e-14 seq5 93.3 3e-14 >seq8 Length=956651 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || ||| || || ||||||||||| | Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCT 415344 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| |||||| || ||||||||| | || || | Sbjct 415345 GATACTATTGAAAAT--GTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATC 415402 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | ||||||||||| ||||||||||| || || | | | | || || ||||| | Sbjct 415403 AGCAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATA 415462 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 | || |||||||| || || ||||| ||||| Sbjct 415463 ATATACAAAAAGAATCAACATTACATTTAGTTTT 415496 >seq5 Length=1684710 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 ||||||||||| ||||| ||||| | || || ||| ||||| ||||||| ||| | Sbjct 156533 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCA 156592 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || || || | ||| || ||| |||||| || |||||||| |||| | Sbjct 156593 TCAGATACAATTGAAAAT--GTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTG 156650 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | ||||||||||| ||||||||||| || || | | | || || || | Sbjct 156651 ATCAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACT 156710 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | ||||| |||||||| || || |||||||| Sbjct 156711 ATAACATTCAAAAAGAATCAACCTTACATTTGGT 156744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862187483423