Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8 165 6e-36 >seq8 Length=956651 Score = 165 bits (182), Expect = 6e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || |||||||| |||||||| || || || | | Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCT 415344 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||||| | ||||| |||||| || || ||||||||| | || || ||||| Sbjct 415345 GATACTATTGAAAATGTTAAAGCAAAAA-TTCAAGATAAAGAAGGTATCCCACCTGATCA 415403 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | ||||| ||||| || |||||| | ||||| | | | || ||| ||||| || Sbjct 415404 GCAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAA 415463 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||||||| || |||||||||||||||||||| || ||||||| Sbjct 415464 TATACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGG 415511 Score = 96.9 bits (106), Expect = 2e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAA 23696 |||||||| |||||||| || || || | | || ||| |||||| | ||||| ||||| Sbjct 414686 GGAAAAACAATCACTCTTGATGTCGAACCATCTGATACTATTGAAAATGTTAAAGCAAAA 414745 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | || || ||||||||| | || || ||||| || | ||||| ||||| || ||||| Sbjct 414746 A-TTCAAGATAAAGAAGGTATTCCACCTGATCAGCAAAGATTAATTTTTGCTGGAAAACA 414804 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGA 23801 | | ||||| | | || ||| || || |||||||||||||| Sbjct 414805 ATTAGAAGATGGCAGAACATTATCTGACTATAACATACAAAAAGA 414849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009398144892