Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5 125 2e-23 seq8 120 7e-22 seq13 93.3 1e-13 >seq5 Length=1684710 Score = 125 bits (138), Expect = 2e-23 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || || || | |||||||| |||||||||| || || ||| Sbjct 156732 GTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 156673 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || |||||| || || ||||| ||||| || |||||||| |||||| || Sbjct 156672 GCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGAT-TTTTGCTTT 156614 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || ||||| | ||| || || | || || || || || || || || Sbjct 156613 AACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGT 156554 Query 225696 TTTTATGAACACTTGCATTTT 225716 ||||| || | ||||||||| Sbjct 156553 TTTTACAAAGATTTGCATTTT 156533 >seq8 Length=956651 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||| ||||| | || ||||| |||||||||| || || ||| Sbjct 415481 GTTGATTCTTTTTGTATATTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 415422 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || ||| || || || || |||||||| || ||||| || |||||| || Sbjct 415421 GCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAAT-TTTTGCTTT 415363 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| ||| || || || || | ||| || || | ||||| || || || || || || Sbjct 415362 AACATTTTCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCCTGTTAATGT 415303 Query 225696 TTTTATGAACACTTGCAT 225713 ||||| ||| | |||||| Sbjct 415302 TTTTACGAAAATTTGCAT 415285 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 |||||||| | || || || | || ||||| |||||||||| || || ||||| || Sbjct 414849 TCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAA 414790 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGC 225641 || | || ||| || || || ||||||||||| || ||||| || |||||| || ||| Sbjct 414789 ATTAATCTTTGCTGATCAGGTGGAATACCTTCTTTATCTTGAAT-TTTTGCTTTAACATT 414731 Query 225642 TTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| || || || || | ||| || || | ||||| || || || Sbjct 414730 TTCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCC 414686 >seq13 Length=615600 Score = 93.3 bits (102), Expect = 1e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||||||||| || |||||||| ||||| ||||||||||| |||||| Sbjct 486108 AATATTTGACCATCAGTAATTGATATAACATTAGTAGGAATATAAGCAGATACATCATTA 486049 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTA 4561 | |||||| | ||||||||| || |||| Sbjct 486048 TTTAATGTTTCAATAACAGGTAATGCAGTTA 486018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530451314006