Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4 224 8e-54 >seq4 Length=1653377 Score = 224 bits (248), Expect = 8e-54 Identities = 594/889 (67%), Gaps = 25/889 (3%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| ||||||| || || | |||| |||||| |||||||| ||||| |||| ||| Sbjct 1529761 AACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAA 1529702 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 ||| || ||||| || ||| ||||| ||| | | || ||| ||| || Sbjct 1529701 CGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAA 1529642 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | | ||||| ||||| |||||||| ||||| || ||| ||| | || || Sbjct 1529641 ACATTCTAATAATCGATCAGCAACAAATTCGATATATTGAGACATAAGTCTTGAATTCAT 1529582 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481 ||||||||| ||||| |||| | || ||| ||| || ||| | | || || Sbjct 1529581 TCCAATTAAA-TCACAAGGTAAAG---AT-TCACAAATAAATGATCTTTCTACTTCAACT 1529527 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 |||||| | | ||||| || | |||| | | ||||||| |||| | | | | Sbjct 1529526 GCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCTATAA 1529467 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | |||||| |||||| || || ||||| || || ||||| | ||| ||| ||| Sbjct 1529466 ATTAAACAATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAAT 1529407 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || | | | | | ||||||| ||||||||| || ||| ||| | Sbjct 1529406 GTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTA 1529347 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 || ||||| ||||| || ||| ||||| | || | || || | | | Sbjct 1529346 AATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTG---TA 1529290 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTT-TTTCTTAACGCACGGAATTGTGTATAT 4780 || || |||||||| |||||| ||||| ||| ||| || || || | | || Sbjct 1529289 TCATTGATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCT-GGTATATTTTCAAT 1529231 Query 4781 AGCGTTAAATAA-TTTA--CTTT-TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836 ||| | |||||| |||| || | |||| || ||| ||||||| | || |||| || Sbjct 1529230 AGCATGAAATAAATTTAACCTCTCTTTCTCATC---CTT-AATATAATTATCAATTAATA 1529175 Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896 ||||| ||||||||||||||||||| | ||| || ||||| ||||| | | | Sbjct 1529174 AACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGG 1529115 Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA-CTAAGTTTTCGTTTACTATACCG 4955 |||| ||| ||| || || | ||||| || ||| | || ||||| |||||| || Sbjct 1529114 CTTCAATTATTTGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCA 1529056 Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015 ||||| ||||||||||| || || ||||| |||||| | | ||| | || | | Sbjct 1529055 TCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAAT 1528996 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 |||| ||| |||||| | | |||||| | |||||| |||||||||| || ||| Sbjct 1528995 TTTTCAAAGTCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCT 1528936 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTA 5124 || |||||||| || | | ||| | ||||||||| ||| ||| ||| Sbjct 1528935 TCAGCTTTTTTATAAAAATTCCATACCTCAGGATACATAATAGGATGTA 1528887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049344971317