Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 484 9e-132 seq4 221 2e-52 >seq8 Length=956651 Score = 484 bits (536), Expect = 9e-132 Identities = 1008/1480 (68%), Gaps = 37/1480 (3%) Strand=Plus/Minus Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 ||||| ||||| ||||||||||| | |||||||| ||||| |||||||| | ||| ||| Sbjct 457935 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 457876 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || |||||||||||||| | | | | |||||| | ||||| | || ||||| | | Sbjct 457875 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTT 457816 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAA---CATCCCAAAGATCGTATTGT 77333 |||| | | |||||||||| | | ||| ||| ||| | ||| ||||| Sbjct 457815 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 457756 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT 77393 | ||||| || || || || | ||||| |||||| || || | | || ||| Sbjct 457755 AATATTCCTTTGCTTGCTGGACTACCTTGATATGATTCATATGGGCCATTTACTTGTGCT 457696 Query 77394 AGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAAT-CTTCTTATTGAG 77452 | |||| | ||| || || | ||||| || ||||| || || ||||| ||| | Sbjct 457695 AATTCAACCGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAA 457637 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 |||| ||||| | ||| | ||||| |||||| ||||| | |||||||||||| Sbjct 457636 TTCTTTAGCTTCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCC 457577 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 || ||||| || ||||||||||||||||| ||||| || ||| ||||||| ||| || Sbjct 457576 TTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGG 457517 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 |||||||| | || |||||||||| | ||||||| || | |||| | || | Sbjct 457516 GTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCGTA 457457 Query 77633 TAGTTTAAGAAAATCAAATC-----TTCCATCTAT-AACAAACATGTTCAAAGCTATAGA 77686 || ||| ||||| |||| || ||||| |||||| | || || || || Sbjct 457456 TAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGA 457397 Query 77687 TGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAG 77746 |||||||||||||| ||||| |||| || | ||||| || || || ||||| Sbjct 457396 AGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAA 457337 Query 77747 ATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTT 77806 |||||||||||| || || || | ||||| ||| || || ||| |||| || || Sbjct 457336 ATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTT 457277 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 77866 ||| | ||| | || || |||||||| || | || | ||||| | || || | Sbjct 457276 ATATAACATATATGGTACACCAGTTTCAATTTG-GCTTTG-TAATATAG---CAAACCA- 457223 Query 77867 TCTAGCTTTTATCATAGAT-TTGTATCGCCTC-----TCTCTTTCATATTGAGTATATAG 77920 | | ||| | | | | || | | ||| ||| |||||||| ||||||| Sbjct 457222 TAAATCTTGTGCAAGAACTGTTTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAA 457163 Query 77921 CCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAA 77980 ||||||||| || |||||| ||| || || || |||||||| || ||||| || Sbjct 457162 TTTTTCAAATTCTTCACCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAA 457103 Query 77981 TGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 | ||||| || ||| ||||| | |||||||| | |||||||| ||||| |||| Sbjct 457102 AGTCCAGTGTTTATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATA 457043 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 ||||| ||| || | ||| |||||| || || ||| ||| | | ||| | ||| || Sbjct 457042 AAATAAATCACGAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTC 456983 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACC 78160 | ||||||||| |||||||| || | ||||| || | | || || ||| || Sbjct 456982 AAAAATATCAGAGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCC 456923 Query 78161 TCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 78220 || ||||||| |||||| || || | |||| ||||||| |||||||||| | || || Sbjct 456922 ACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATT 456863 Query 78221 AGATGTTCCATTTGTTCCAGAAATATAAC--TTCCACTTG--CGCGAATAT-TACTAATG 78275 ||| | ||||| ||||| ||||||| || ||| | ||||||| | || | Sbjct 456862 TGATATACCATTAGTTCCTCTAATATAAGAATT----TTGTCCTCGAATATCTTGTACAG 456807 Query 78276 GATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAG 78335 | | ||||| |||||||| | ||| || | || || | || ||||| || | Sbjct 456806 CA-ACACCTATACCTCCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAAT 456748 Query 78336 ATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATG 78394 ||||| ||||| ||| |||| | ||| || |||||| ||||||||| | Sbjct 456747 ATACCTTCTATTGAATCAGATTTCATTGATAATAA-AAAACATGAAGACATTTGGGGTCT 456689 Query 78395 AACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAG 78454 ||||| | |||||||||||| |||| ||||| ||||| |||||| ||| | || Sbjct 456688 TGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAA 456629 Query 78455 ATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCA 78513 || ||| ||||| | |||| ||| || || || | ||| ||||||| | ||| | || Sbjct 456628 ATGGTAAGTTTCTAAAGCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCA 456570 Query 78514 TCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTT 78573 | || | ||| ||||| | ||||| | |||||||| || || ||||| || | | Sbjct 456569 TTAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCT 456510 Query 78574 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 | || |||||||| |||||||| | || ||| ||||| Sbjct 456509 CTAATGTTTTAAATCCAAAATAATCATAATTAAAATCTCT 456470 >seq4 Length=1653377 Score = 221 bits (244), Expect = 2e-52 Identities = 391/563 (69%), Gaps = 14/563 (2%) Strand=Plus/Minus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 |||||||| |||||| || | |||||||| |||||||||||||| ||| |||| Sbjct 1529466 ATTAAACAATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAAT 1529407 Query 48195 GTGAGACCGGGCA--TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 || | ||| | | ||| | ||||||| | |||||||||||| ||| |||| Sbjct 1529406 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAATATTGCACAAAAACTTCCAC 1529349 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAAC---TGGCTT 48309 ||| ||||| ||||| || ||| || || ||| || | || | | | Sbjct 1529348 TAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTAT 1529289 Query 48310 CGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 | ||| ||||| |||||| || || || |||| || || |||| | Sbjct 1529288 CATTG---ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAA 1529232 Query 48370 TAGCATTAAAGAGAAAGtttttttCA-TTGCT-ATCTTTAACGTAAGTATCTATTAAAAG 48427 |||||| ||| | || || || || || ||| |||| ||| |||| ||||| | Sbjct 1529231 TAGCATGAAATA--AATTTAACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAA 1529174 Query 48428 ACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGC 48487 |||||| |||| || || |||||||||| || || ||||| ||||| | | || Sbjct 1529173 ACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGC 1529114 Query 48488 TTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATC 48547 ||| | || |||||||| | ||||| ||||||||| || |||||||||||| Sbjct 1529113 TTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATC 1529054 Query 48548 ACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT 48607 |||||| |||||||||||||| |||||||| ||||||| |||||| || | | | ||| Sbjct 1529053 ACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT 1528994 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 | |||| || | ||| |||||| ||||| |||||||| ||||||||||| || || Sbjct 1528993 TTCAAAGTCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTC 1528934 Query 48668 TGCTTTTTTATACATATTCCATA 48690 ||||||||||| | |||||||| Sbjct 1528933 AGCTTTTTTATAAAAATTCCATA 1528911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668374515360