Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8 551 8e-152 seq4 226 4e-54 >seq8 Length=956651 Score = 551 bits (610), Expect = 8e-152 Identities = 1051/1528 (69%), Gaps = 39/1528 (3%) Strand=Plus/Minus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||| ||||| |||| |||||| ||| || || | || | ||||| ||||| || Sbjct 457981 ATGGGGATTGACAACAAAAAATTCACCACTTAAAACACGTCTATAATAAATGTTACTTGT 457922 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||||||| | |||||||| ||||| |||||||| | ||||||||| || |||||||| Sbjct 457921 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 457862 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 ||| | | | | |||||| | ||||| | || ||||| | ||||| | | ||| Sbjct 457861 TGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCA 457802 Query 75886 ATCCCAA-AGATCTGATGGTACAA---CATCCCAGAGATCGTATTGTAGAATTCCGTTGC 75941 ||||||| | | | || ||| ||| ||| | ||| |||||| ||||| |||| Sbjct 457801 ATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTGC 457743 Query 75942 TAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCG 76001 | || || | ||||| ||| || | || | || |||| ||| ||| || Sbjct 457742 TTGCTGGACTACCTTGATATGATTCATATGGGCCATTTACTTGTGCTAATTC--AAC-CG 457686 Query 76002 CC---TCTAACGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTATTAAGATCTTGCGCT 76057 | ||||| ||| | ||||| || ||||| || || ||||| |||| |||| ||| Sbjct 457685 ACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAAT-TCTTTAGCT 457627 Query 76058 TCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCA 76117 || | ||| | ||||| |||||| ||||||| |||||||| ||| || ||||| Sbjct 457626 TCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCT 457567 Query 76118 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTA 76177 || ||||||||||||||||| ||||| || ||||||||||| ||| ||||||||||| Sbjct 457566 ATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAATTT 457507 Query 76178 ATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGA 76237 | || |||||||||| | |||||| || | |||| | || | || ||| | Sbjct 457506 CTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCGTATAATTTTTTA 457447 Query 76238 AAATCAAA-----TTTTCCATCTATC-ACAAACATATTAAGAGCTATAGATGCTAGATTA 76291 |||| ||| |||| |||||| ||||| || | || || || ||||||||| Sbjct 457446 AAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGATTA 457387 Query 76292 CAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACAC 76351 ||||| ||||| |||| || | ||||| || || || |||| ||||||||| Sbjct 457386 CAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTACAT 457327 Query 76352 TTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACA 76411 || || || || | ||||| ||| || || ||||||| || ||||| | | | Sbjct 457326 TTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATATAACATA 457267 Query 76412 AACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTT 76471 | || ||||||||||| || | || | ||||| | || || | || | || Sbjct 457266 TATGGTACACCAGTTTCAATTTG-GCTTTG-TAATA---TAGCAAACCA---TAAATCTT 457215 Query 76472 ATTATAGA------TTTGTA--TCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAA 76523 | ||| ||| || | || ||| |||||||| ||||||||| ||||| Sbjct 457214 GTGCAAGAACTGTTTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTCAA 457155 Query 76524 ATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACT 76583 |||| || |||||| ||| ||||| ||||||||||| |||||||| || | ||| | Sbjct 457154 ATTCTTCACCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGT 457095 Query 76584 CACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 76643 || ||| ||||||| |||||||| | |||||||| ||||| |||| ||||| || Sbjct 457094 GTTTATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAAAT 457035 Query 76644 CTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATAT 76703 | || | ||| |||||| || || ||| ||| | | ||||| || || | ||||| Sbjct 457034 CACGAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATAT 456975 Query 76704 CAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGAT 76763 |||| |||||||| || | ||||| || | | ||| || ||| || || |||| Sbjct 456974 CAGAGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTGAT 456915 Query 76764 CTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTAC 76823 ||| |||||| || || | |||| ||||||| |||||||||| | || || ||| ||| Sbjct 456914 CTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATATAC 456855 Query 76824 CATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTC 76883 |||| ||||| ||||||| | | ||||||| | || | ||||| | Sbjct 456854 CATTAGTTCCTCTAATATAAGAATTTTGTCCTCGAATATCTTGTACAGCAACACCTATAC 456795 Query 76884 CTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATAC 76943 ||||||| ||||| ||| | ||||| | || ||||| ||| | || || ||||| Sbjct 456794 CTCCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTG 456735 Query 76944 TATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 |||| ||| || ||| || |||||| ||||||||| | ||||| | | Sbjct 456734 AATCAGATTTCATTGATAATAA-AAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGAA 456676 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062 ||||| |||||||||| |||||||| || |||||| ||| | || || ||| ||||| Sbjct 456675 TTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGTTTCT 456616 Query 77063 ATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTG 77121 | | || ||| ||||| || | ||| ||||||| || || | ||| || | ||| || Sbjct 456615 AAAGCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCATTAATAAATGTTG 456557 Query 77122 AGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAA 77181 ||| ||||| | | | |||||||| || || ||||| || | || || |||||||| Sbjct 456556 AGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTCTAATGTTTTAAA 456497 Query 77182 ACCAAAATAGTTGTATGAAAAGTCTCTT 77209 |||||||| | || ||| |||||| Sbjct 456496 TCCAAAATAATCATAATTAAAATCTCTT 456469 >seq4 Length=1653377 Score = 226 bits (250), Expect = 4e-54 Identities = 401/577 (69%), Gaps = 22/577 (4%) Strand=Plus/Minus Query 46624 ATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAAT 46683 |||||||| |||||| || | |||||||| |||||||||||||| ||| |||| Sbjct 1529466 ATTAAACAATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAAT 1529407 Query 46684 GTGAGCCCAGGCA--TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 || | ||| | | ||| | | ||||| | ||||||||| || ||| |||| Sbjct 1529406 GTTAAACCATGTAATTTATTTT--GTTTTTTAAACCAAAATATTGCACAAAAACTTCCAC 1529349 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC---TGGCAT 46798 ||| ||||| ||||| ||| || || |||| ||| || | || | | || Sbjct 1529348 TAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTAT 1529289 Query 46799 CATTATGAATCCACCTTTGAGC--CCAATCAGCCTTT-TTCTTTACACAAGGCATTGTTT 46855 |||| ||||| || ||| || || | |||| || |||| || || ||| Sbjct 1529288 CATTG---ATCCA---TTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTT 1529235 Query 46856 CTATAGCATTAAAGAGA---AAGtttttttCATCACTATCTTTAACATATGTATCTATTA 46912 | ||||||| ||| | | || | | || ||| || |||| ||| |||| |||| Sbjct 1529234 CAATAGCATGAAATAAATTTAACCTCTCTTTCTCA---TCCTTAATATAATTATCAATTA 1529178 Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC 46972 | | |||||| |||| ||||| || ||||||| ||| || ||||| ||||| | Sbjct 1529177 ATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTT 1529118 Query 46973 TTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTC 47032 | |||||| | || ||||||||| | ||||| || |||||| || ||||||| Sbjct 1529117 TGGCTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTC 1529058 Query 47033 CATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA 47092 |||||||||| ||||||||||| || |||||||| ||||||| |||||||| | | | Sbjct 1529057 CATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTA 1528998 Query 47093 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACG 47152 ||| | |||| || | ||| |||||| ||||| |||||||| ||||| ||||| | Sbjct 1528997 ATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGG 1528938 Query 47153 CCTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 | || ||||||||||| | |||||||| ||| |||| Sbjct 1528937 CTTCAGCTTTTTTATAAAAATTCCATACCTCAGGATA 1528901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933963327680