Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5 104 5e-17 seq8 95.1 3e-14 >seq5 Length=1684710 Score = 104 bits (114), Expect = 5e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| ||||| || || | ||||||||| |||||||||| ||| || Sbjct 156732 GTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 156673 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || || || || | | |||||||| || ||||| |||||| ||| Sbjct 156672 GCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 156613 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | ||||| || || ||||||||||| ||||| || || | || Sbjct 156612 ACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTT 156553 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || |||| |||||||| Sbjct 156552 TTTACAAAGATTTGCATTTT 156533 >seq8 Length=956651 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| || || ||||| | ||| ||||| |||||||||| ||| || Sbjct 415481 GTTGATTCTTTTTGTATATTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 415422 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | || ||||| || | | ||| ||||| || |||||||||||| ||| Sbjct 415421 GCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTTGCTTTA 415362 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || || || || |||||||| || ||||| || || | || Sbjct 415361 ACATTTTCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCCTGTTAATGTT 415302 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 415301 TTTACGAAAATTTGCAT 415285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820075616879