Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4 226 3e-54 >seq4 Length=1653377 Score = 226 bits (250), Expect = 3e-54 Identities = 565/843 (67%), Gaps = 39/843 (5%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||||||||| || |||| | |||| || |||||||| || || | Sbjct 1529764 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1529705 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATAT--ACAGCTTTACAT 23322 ||| ||||| ||||| || ||||||||| | || || | | ||||| | Sbjct 1529704 TAACGATATTAAGTCCATCCAACTAAATGGATT-----TTTTGAATGGAAAACTTTAGAA 1529650 Query 23323 GA---TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCA 23379 | ||| | ||| | | ||| || |||||||| ||||||||| |||| || || Sbjct 1529649 CAACCTAAACATTCTAATAATCGATCAGCAACAAATTCGATATATTGAGACAT-AAGTCT 1529591 Query 23380 T-AGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 | | || || || |||| | || | | ||| | | ||| | |||| | Sbjct 1529590 TGAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTC 1529531 Query 23439 AACAGCATCTTTAATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATA 23495 ||| || ||||||| ||| |||||||| ||||| || | || || ||| | Sbjct 1529530 AACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGG--TAATTT-ATTTTCTAACAA 1529474 Query 23496 CTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 || | | |||||| |||||| |||| ||||||||||||||||| |||||||| Sbjct 1529473 GCTATAAATTAAACAATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATT 1529414 Query 23556 AGAAAATGTTAATCC-TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATG 23614 | ||||||||| || || ||| || | ||||||||| ||||||||||||| ||| Sbjct 1529413 ACTAAATGTTAAACCATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAAC 1529355 Query 23615 ATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTG 23674 ||| ||| || || || || ||| ||| || |||| | | | |||| | Sbjct 1529354 TTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGA-- 1529297 Query 23675 CATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA-ATT 23733 ||| |||| |||||||| || ||| | | ||| | |||| || || Sbjct 1529296 -ATTTGTATCATTGATCCATTTAGCTGCCCA-TAATGCTTTATTTTTTATTGCTGGTATA 1529239 Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTT----TTTCTTCATTATCTGTTATATATGTATC 23789 ||||||| || | || | || ||| | |||| | ||| | ||||| |||| Sbjct 1529238 TTTTCAATAGCAT----GAAATAAATTTAACCTCTCTTTCTCATCCTTAATATAATTATC 1529183 Query 23790 AATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAA 23849 ||||| ||||||||| |||||||||| |||||||||| ||| || ||||| |||||| Sbjct 1529182 AATTAATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAA 1529123 Query 23850 ACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAAC 23909 | | |||||| | ||| || || | |||||| | |||| |||||||| || Sbjct 1529122 TTTTTTGGCTTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATAC 1529063 Query 23910 AATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---C 23966 || ||||||||||| ||||| || || | |||| ||||||||||||| |||||| | Sbjct 1529062 TATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTAC 1529003 Query 23967 AGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCA 24026 | | |||||||| | || || | ||| |||||||||| | || ||| | ||||| Sbjct 1529002 ATT---TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCA 1528946 Query 24027 AAA 24029 ||| Sbjct 1528945 AAA 1528943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487680588600