Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq11 105 9e-18 seq10 104 3e-17 >seq11 Length=733468 Score = 105 bits (116), Expect = 9e-18 Identities = 262/392 (67%), Gaps = 12/392 (3%) Strand=Plus/Minus Query 50478 GATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAATTGC 50537 || ||||| || | || || |||||||||||||| ||||| || |||| | || Sbjct 126364 GACTTAGGGCCGATCTATGGATTTCAATGGAGACACTTTGGTGCTGAATACACAGATATG 126305 Query 50538 GACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTAT-AACGACGTTGAA 50596 | | |||| ||| | |||| || ||||| | |||| ||||| || || || Sbjct 126304 TATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATCAATTTAATTAAA 126245 Query 50597 AACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGATCA 50656 || | || | | | | || ||| | || || |||||| || ||| ||||||| Sbjct 126244 AATGATCCGACATG-TAGACGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATCA 126186 Query 50657 AACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG----CCACAGACAATGTTT 50712 || | |||||||| |||||| |||||||||||||||||| | || || | Sbjct 126185 AATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAA----T 126130 Query 50713 TATCCTGT-CAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTA 50771 |||| ||| ||| |||||| |||| |||| | ||| | || ||||| || || | Sbjct 126129 TATCATGTATTATG-TATCAACGATCTTGTGATTTAGGTCTTGGTGTTCCATTTAATATT 126071 Query 50772 GCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAA 50831 ||||| || || |||| || ||| |||| || |||| || | |||| | ||| Sbjct 126070 GCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAA 126011 Query 50832 TTTATTCATACGTTAGGAGACGCTCATATTTA 50863 ||||| ||| |||||| | |||||| |||| Sbjct 126010 TTTATACATGTATTAGGAAATGCTCATGTTTA 125979 >seq10 Length=766960 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| ||||||| | || | || || |||||| ||||| || | ||||| || Sbjct 711416 TTTAATATTTGAATTCTACCTTCTTTATTTGGTAATGATATTTCAATATGTAATTCAAAT 711357 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 | || ||||||||||||||||| |||||||| || ||| || ||||| || || | | Sbjct 711356 CTACCTGGTCTTAATAATGCTTCATCAATTAAATCTATTCTATTTGTCATTCCAATTAAT 711297 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTA 156045 | || || |||||| | ||| || |||||||| || |||||||| || |||| Sbjct 711296 AGTATATTATTTAAACTATTTACTCCATCTATTTTTGATAATAATTGGTTAACTA 711242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667074791416440