Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8 156 1e-32 seq5 122 2e-22 >seq8 Length=956651 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | ||||||||||| ||||| || || || ||| || || Sbjct 415288 CAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCTGAT 415347 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| || |||||||| ||||| || || |||||| Sbjct 415348 ACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAGCAA 415407 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || |||||||| | ||||||||||| || | | |||||||| | Sbjct 415408 AGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAATATA 415467 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||||||| | ||| | ||||| ||| | ||| Sbjct 415468 CAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGA 415506 >seq5 Length=1684710 Score = 122 bits (134), Expect = 2e-22 Identities = 149/203 (73%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || || ||||| | || |||||||| || || || || || ||| Sbjct 156533 AAAATGC---AAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAA 156589 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| || || || || || ||| ||| || || || ||||||||||| || || Sbjct 156590 CCATCAGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCT 156649 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||| || | || || || |||||||| | |||||||| || ||| | | || Sbjct 156650 GATCAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGAC 156709 Query 178095 TATAACGTCCAAAAAGAATCAAC 178117 |||||| | |||||||||||||| Sbjct 156710 TATAACATTCAAAAAGAATCAAC 156732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730444282506