Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 4e-13 >seq5 Length=1427117 Score = 89.7 bits (98), Expect = 4e-13 Identities = 200/298 (67%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 18792 GACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGT 18851 ||| | || |||||||| ||||||||||||||||| || || || ||||| | | | | | Sbjct 1017183 GACTTGGGGCCCATTTATGGCTTCCAGTGGAGACACTTCGGTGCTGAATACACA-AATAT 1017241 Query 18852 CAATCA-AACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAA 18910 || | || || | | |||| | || || | ||| |||||| || ||| || Sbjct 1017242 GCATGACAATTACGAAGATAAAGGTGTAGACCAATTAAAAAATGTTATTCATTTAATAAA 1017301 Query 18911 AACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTT 18970 || | ||| ||| | |||| ||| | | | |||||| ||| ||| | Sbjct 1017302 AAATGAACCAACAAGTAGGAGAATTATTTTGTGTGCATGGAATGTAAAAGATTTGGATCA 1017361 Query 18971 AATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATC 19030 ||||| ||||||| ||||| | ||||| || ||||||||| | || || |||| Sbjct 1017362 AATGGCTTTACCTCCTTGTCATATTTTATGCCAATTTTACGTTTTCGATGGGAAACTATC 1017421 Query 19031 CTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 ||| | |||||||| || | || |||| |||||||| || |||||||| ||| Sbjct 1017422 ATGCATTATGTACCAGAGGTCTTGTGACTTGGGTCTTGGGGTCCCCTTCAACATCGCT 1017479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399502179010830