Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=1427117 Score = 104 bits (114), Expect = 2e-17 Identities = 289/438 (66%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 101637 TAAGTGTTGGAAACGGTCTAGGAGTTCGCGT-CAACTGCATTTTAAGAGCA-TCAATGTG 101694 |||| ||||| ||||| |||| | || || || ||||| ||| | ||| |||| || Sbjct 1017633 TAAGCGTTGGGAACGGG-TAGGGGATCCTGTTCAGCTGCACTTTCA-AGCTGTCAACATG 1017576 Query 101695 ATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGT 101754 | |||| ||| || | || | | | || || |||| | ||||| | ||| Sbjct 1017575 GTTGTTGTAGACGTGCGCGTTGCCCAAAATGTGTATGAACTGTGCAGGCTGCAAATTGCA 1017516 Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 || || ||||||||| || || | ||||| ||| ||||| || || || || | Sbjct 1017515 CACCTGCGCAATCATGTGTGTGAATATGGAATACGAAGCGATGTTGAAGGGGACCCCAAG 1017456 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||| ||| || || || |||| || || || || ||||| | || ||||| Sbjct 1017455 ACCCAAGTCACAAGACCTCTGGTACATAATGCATGATAGTTTCCCATCGAAAACGTAAAA 1017396 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||| | ||| | ||||||||| || || |||||| | | ||| |||||||| || Sbjct 1017395 TTGGCATAAAATATGACAAGGAGGTAAAGCCATTTGATCCAAATCTTTTACATTCCATGC 1017336 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAA 101994 ||||| | || || ||| ||| || | ||||||| || ||| | | |||||| Sbjct 1017335 ACACAAAATAATTCTCCTACTTGTTGGTTCATTTTTTATTAAATGAATAACATTTTTTAA 1017276 Query 101995 TTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATG 102054 |||||| || |||| ||| |||| | | | | | ||||| || ||||| || Sbjct 1017275 TTGGTCTACACCTTTATCTTCGTAATTGTCATGCATATTTGTGTATTCAGCACCGAAGTG 1017216 Query 102055 CCTCCACTGAAATCCATA 102072 |||||||| || ||||| Sbjct 1017215 TCTCCACTGGAAGCCATA 1017198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249553371874