Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq13 138 1e-27 >seq13 Length=2073822 Score = 138 bits (152), Expect = 1e-27 Identities = 366/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 ||||| ||| || || || |||| |||||||| || || || ||||||||| || Sbjct 1904637 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1904578 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGAAAATTCC 24259 | | | |||| |||| |||||| |||| | || | | ||| | ||| | || || Sbjct 1904577 AATTTGTTCTGCTTCTTAAACCAAAAGATGG-CACAGAAGCTCCCACTAAATAGGATGCC 1904519 Query 24260 TTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTT 24319 || || ||| ||| | | |||||| || || | | | |||| |||||| || Sbjct 1904518 CTCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTT 1904459 Query 24320 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||| || || ||||| ||| || || | || || || | |||||||| Sbjct 1904458 GGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATT 1904399 Query 24380 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 24439 || | || || ||||| | || | |||||||| | || || | |||||||| Sbjct 1904398 CATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATG 1904339 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTT 24498 || || || | || ||||| || |||| ||| ||| |||||||| || | |||| Sbjct 1904338 GATATTCTCTACAGCAATTTGGAAGGCGTA-AAATTTCTTTGCCTCGGTTATTTTCACTT 1904280 Query 24499 CTA-TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 24557 || ||| | | || |||| |||||| || ||||| |||||||||||||| || Sbjct 1904279 GGCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAG 1904221 Query 24558 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 24617 ||||| || |||||||| |||| |||||| | ||| ||| | |||| || | | Sbjct 1904220 GCCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAA 1904161 Query 24618 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 24677 || | || | || | ||| || | ||||| || || ||||| |||||||| || | | Sbjct 1904160 TCGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAA 1904101 Query 24678 TTCCAGATGTC 24688 | ||| | ||| Sbjct 1904100 TCCCAAACGTC 1904090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718824351520