Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 seq13 95.1 1e-14 >seq11 Length=2126511 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| |||| ||||||||||| || ||||| ||||| |||| | | |||||| Sbjct 229967 ACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCC 229908 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | ||| || || | ||| || || ||||||||||| || | |||||||| || | Sbjct 229907 AACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCA 229848 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || ||| ||| || | | | || || | |||| |||| ||| ||||| || Sbjct 229847 ATTTTTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTT 229788 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||||||| ||||| || ||||||||||||||| Sbjct 229787 CCGGTTAATGTTTTTACGAATATTTGCATTTTG 229755 >seq13 Length=2073822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| || |||| || ||| |||| |||| ||||| ||| Sbjct 509552 GTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCC 509493 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| ||||||||||| || ||| | ||| |||||||| || || |||| Sbjct 509492 GCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTC 509433 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||| | || || | || |||||||| || |||| ||| Sbjct 509432 ACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTC 509373 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 509372 TTCACAAAAATTTGCAT 509356 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| || || | || ||| | || |||| ||||| ||| Sbjct 509780 GTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCC 509721 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| ||||||||||| || ||| | ||| |||||||| || || |||| Sbjct 509720 GCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTC 509661 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| |||||| | || || | || |||||||| || |||| ||| Sbjct 509660 ACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTC 509601 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| |||||||| Sbjct 509600 TTCACAAAAATTTGCAT 509584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| ||||| || ||||| || |||| || ||| |||| |||| |||||||| Sbjct 509324 GTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTGCCG 509265 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTG--TT 21096 ||| | ||||||||||||||||| ||| | || || ||||| | | ||||| | Sbjct 509264 GCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTC--CTGTATTTTGGCCT 509207 Query 21097 TCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACG 21156 |||| | | | || || | |||| || | ||| |||||||| || || | || Sbjct 509206 TCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCG 509147 Query 21157 TTTTGACAAATATTTGCAT 21175 | || ||||| |||||||| Sbjct 509146 TCTTCACAAAAATTTGCAT 509128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | || ||||| || ||||| || ||||| ||||| | Sbjct 510038 CCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGAT 509979 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| |||| |||| |||||||| ||| | || ||||||||||| || ||| Sbjct 509978 AGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGA 509919 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTG--TTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | || || || || | | ||||| |||||| | | | || || | |||| Sbjct 509918 ATTCCCTCTTTATC--CTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCA 509861 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | ||| || ||||| |||||||| Sbjct 509860 CATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257275289784