Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq13 132 7e-26 seq11 93.3 6e-14 >seq13 Length=2073822 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| |||||||| || || || ||| | || | ||| || Sbjct 509356 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509415 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| |||||||| || || || || || || |||||||| Sbjct 509416 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509475 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || |||||||| ||||||||||| || || | |||| | ||||| || Sbjct 509476 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509535 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || || ||||| || | || ||||| || ||||||||||||||||| ||| || Sbjct 509536 ATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGGTATGCAAATTT 509593 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| |||||||| || || || ||| | || | ||| || Sbjct 509584 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509643 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| |||||||| || || || || || || |||||||| Sbjct 509644 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509703 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || |||||||| ||||||||||| || ||| | |||| | ||||| || Sbjct 509704 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 509763 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || || ||||| || | || ||||| |||||||| |||||||||| ||| || Sbjct 509764 ATCCAGAAGGAATCCACCCTACACTTGGTCCTACGTTTAAGAGGTGGTATGCAAATTT 509821 Score = 100 bits (110), Expect = 4e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| |||| |||||| || || ||||| || || || || || || Sbjct 508960 GACACAATTGAGAATGTAAAGTCGAAAATACAGGACAAAGAGGGAATTCCCCCCGACCAG 509019 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || |||||||| ||||||||||| || ||| | |||| | ||||| || Sbjct 509020 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 509079 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || || ||||| || | || ||||| |||||||| |||||||||| ||| || Sbjct 509080 ATCCAGAAGGAATCCACCCTACACTTGGTCCTACGTTTAAGAGGTGGTATGCAAATTT 509137 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || || | || | || || Sbjct 509128 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509187 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| || || ||||| || || || || || || Sbjct 509188 GACACGATTGAAAATGTGAAGGCCAAAATACAGGACAAAGAGGGAATTCCCCCCGACCAG 509247 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||| ||||| || |||||||| || || | |||| | ||||| || Sbjct 509248 CAGAGACTTATATTTGCCGGCAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509307 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || || ||||| || | || ||||| || ||||||||||||||||| ||| || Sbjct 509308 ATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGGTATGCAAATTT 509365 >seq11 Length=2126511 Score = 93.3 bits (102), Expect = 6e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| |||| ||| |||| || ||||| || || | || | || ||| Sbjct 229758 AATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCATC 229817 Query 124598 TGATACAATTTCTAA-TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| || ||||| || |||||| ||||||| ||||| || |||||||| | Sbjct 229818 CGAAACGATTAGGAACGTTAAATCA-AAAATTGAAGATAAGGAAGGAATCCCACCTGACC 229876 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 | || ||||| || | | ||||||| || || |||||| Sbjct 229877 AGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGAT 229914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755452468243200