Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 3e-14 seq11 82.4 6e-11 >seq13 Length=2073822 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || |||||||| |||| | ||| | | |||| Sbjct 509795 AGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCT 509736 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| |||||| | || ||||| || ||||| ||| | ||| ||||| || Sbjct 509735 TCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 509676 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | | | | ||| || | || |||| |||||| | Sbjct 509675 TGAATTT-TGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGT 509617 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || || |||||||||||||| Sbjct 509616 CTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509584 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | ||| | || ||||| || || ||||||||||||| | ||| | | ||| Sbjct 510023 AGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCT 509964 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||||||||| ||| | || ||||| || ||||| ||| | || || ||||| Sbjct 509963 TCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCC 509904 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || || || | | ||| ||||| | ||| |||| ||||||| | Sbjct 509903 TGTATTT-TGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGT 509845 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || || |||||||||||||| Sbjct 509844 CTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509812 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| || || |||||||| || | | ||| | | |||||| Sbjct 509336 ACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCC 509277 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||||||||| ||| | |||||||| || || || ||| | || || || || Sbjct 509276 AATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTCCTGT 509217 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 |||| ||| || | | ||| ||||| | ||| |||| ||||||| | || Sbjct 509216 ATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTT 509157 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | || || |||||||||||||| Sbjct 509156 CCCGTAAGCGTCTTCACAAAAATTTGCAT 509128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| || || |||||||| || | | ||| | | |||||| Sbjct 509564 ACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCC 509505 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| |||||| | || ||||| || ||||| ||| | ||| ||||| || | Sbjct 509504 AATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGA 509445 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || || || | | | | ||| || | || |||| |||||| | || Sbjct 509444 ATTT-TGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTT 509386 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | || || |||||||||||||| Sbjct 509385 TCCTGTTAGCGTCTTCACAAAAATTTGCAT 509356 >seq11 Length=2126511 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| ||| || || || || || || ||||||||||| |||| | ||| || Sbjct 229968 TACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTC 229909 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||| || || || | ||| || || || || || || || | ||||||||||| | Sbjct 229908 CAACTGCTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTC 229849 Query 18236 AATTTGTTGCTTGACCTGTGC-AACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| ||| || | | | | || || || | ||| || | ||||||| ||| Sbjct 229848 AATTT-TTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTT 229790 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| ||||||||||| || ||||||||||| Sbjct 229789 TTCCGGTTAATGTTTTTACGAATATTTGCATTTT 229756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379342270902630