Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 190 2e-43 >seq13 Length=2073822 Score = 190 bits (210), Expect = 2e-43 Identities = 977/1541 (63%), Gaps = 45/1541 (3%) Strand=Plus/Minus Query 22436 TCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495 || || | ||| || |||||||||| ||||| || | ||| || | | |||| Sbjct 560483 TCCTTCAGCAGGTGGGGGTTCACCACGAAGAACTCTCCACTGAGGACCCGCCTGTAGTAA 560424 Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555 || || ||| |||| || || ||||| ||||| ||||| || |||| || || || Sbjct 560423 ATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGATGCA 560364 Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTG 22615 |||||||| || || | || || || || ||||| |||||||| |||||| ||| Sbjct 560363 GTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGCCTTC 560304 Query 22616 AG--CATCGACCAGTCCCA------CAGATCGGACGGCGTCACATTGTCCCACATATCGT 22667 || |||| ||||||||| | ||| || | | ||||| |||||| || Sbjct 560303 AGTTCATC--CCAGTCCCAATACTTCTTATCT-AC--CTTAACATT---CCACATGTCAA 560252 Query 22668 ATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCG 22727 | || | | || | || || || || || | ||| || || || || ||||| | | Sbjct 560251 ACTGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGCT 560192 Query 22728 CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGT 22787 ||| || || | | |||||||| || ||||| || |||||||| ||| | |||| Sbjct 560191 GGGCCAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 560132 Query 22788 TCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG-CATCATCACGAACGCGTCCGCC 22846 | | || || | | |||||| || |||| || | || ||| | ||| ||| Sbjct 560131 TTAGCTCTTTAGCAGAATCAGATTCGTAGGG-ATACCTCAGAAGCATGAAGGTGTCTGCC 560073 Query 22847 ATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGC 22906 | ||||| || ||||| || || |||| || | || || || || ||||| | Sbjct 560072 AGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCC 560013 Query 22907 AAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATN 22966 | || || ||||| || || || || ||| || | ||| | |||||| || || Sbjct 560012 ACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATT 559953 Query 22967 NNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA-----ACAAACTTGTTGACGG 23021 | ||||| |||| | | || | || || || ||| | | Sbjct 559952 TCGTAGAGCTTCTTAAAGT--TAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCG 559895 Query 23022 CGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGG 23081 |||| ||||| | ||||| |||||||| ||||| || || ||||||| |||||| Sbjct 559894 CGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGC 559835 Query 23082 TACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141 || || |||||||| ||||| ||||||||||| |||| || ||| ||| || | Sbjct 559834 AGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGG 559775 Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCC 23201 | || ||||| |||||||| || ||||| || | ||| || | || || || Sbjct 559774 AGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACC 559715 Query 23202 ACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGG--TA 23259 | | ||| || | || | | | | | ||||||||| || ||||| || Sbjct 559714 ATAGGTCCTGCGCAAGGACGGTTTTCTTGCCCATATTTTCTTCCTCATA--TTTGGTATA 559657 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 ||| || ||||| | || | | ||| || || || ||| |||| ||||| Sbjct 559656 TAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACAT 559597 Query 23320 GAGACTCCACATTGAGTCATTTTC---AACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 | | |||| ||| | |||||| || | ||||||| || || |||| ||||| Sbjct 559596 CAAAGTCCA-ATT--TTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATAC 559540 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA--TCC 23434 ||||||||||| || | || | | ||| || || || ||| | |||| | || || Sbjct 559539 GGCGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCC-GTGAT-TTTTGCGAAGGTCT 559482 Query 23435 AAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTC 23494 ||||| || || | ||| | |||||||| |||| ||| || || || | || |||| Sbjct 559481 AAAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGAACCTTTTCTC 559422 Query 23495 TTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACG 23554 || || || || || || || | || |||| || | || || ||||| || || Sbjct 559421 TTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACT 559362 Query 23555 AGACCGTTGGACGCGCCGCCTACGCCCGC-CACACTCGAACCTTTTG--CTCGAACGTTG 23611 | |||||||| |||| || ||| | | |||| ||||| | | || | Sbjct 559361 AACCCGTTGGAAATGCCG-TTAGTCCCTCTGATGTACGAA--TTTTGCCCCCTAATATCC 559305 Query 23612 TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTG 23671 || ||| | || || || || ||| ||| |||| ||| || || || ||||| Sbjct 559304 TGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTC 559245 Query 23672 TCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC 23731 || | ||||| || || |||| ||| | || | ||||| |||||||| || Sbjct 559244 TCAAATATGCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGT 559185 Query 23732 GCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGAC 23791 | |||| || | | ||||| || || | ||||| || || || | ||| Sbjct 559184 GGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGAC 559125 Query 23792 ATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACG 23851 || |||| |||||| || | || || | || || ||| || || || | || Sbjct 559124 ATCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACT 559065 Query 23852 CGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAA 23911 | ||||| || | ||| |||||||| | | || |||||| | || || || Sbjct 559064 CTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGAC 559005 Query 23912 CGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 | || || || ||||| ||||| ||||| || ||||| || Sbjct 559004 CTTTCCAATGTCTTAAACCCAAAGTAGTCGTAATTAAAATC 558964 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || || || |||||| | || || || | ||| Sbjct 509128 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509187 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | |||| |||||| || || | || ||||||||| Sbjct 509188 GACACGATTGAAAATGTGAAGGCCAAAATACAGGACAAAGAGGGAATTCCCCCCGACCAG 509247 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||| || |||||||| ||||||||| | ||| | ||||| ||| Sbjct 509248 CAGAGACTTATATTTGCCGGCAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509307 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || ||||| || || || |||| Sbjct 509308 ATCCAGAAGGAATCCACCCTACACTTGGT 509336 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || ||||| || || ||||| | || || ||| | ||| Sbjct 509356 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509415 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| || ||| | ||| ||||||||| ||| | || || || ||| Sbjct 509416 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509475 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| ||||||||| | ||| | ||||| ||| Sbjct 509476 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509535 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || || || ||||| || || || |||| Sbjct 509536 ATCCAGAAGGAATCCACCCTACACTTGGT 509564 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || ||||| || || ||||| | || || ||| | ||| Sbjct 509584 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509643 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||||| || ||| | ||| ||||||||| ||| | || || || ||| Sbjct 509644 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509703 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| |||||||| | ||| | |||||| ||| Sbjct 509704 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 509763 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || || || |||| || Sbjct 509764 ATCCAGAAGGAATCCACCCTACACTTGGTCCT 509795 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || || || || |||||| | || || || | ||| Sbjct 509812 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509871 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | |||| ||| || || || | || ||||| ||| Sbjct 509872 GACACGATTGAAAATGTGAAAGCCAAAATACAGGATAAAGAGGGAATTCCCCCCGATCAG 509931 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||| || |||||||| ||||||||| | || | ||| || ||| Sbjct 509932 CAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACAAC 509991 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||||| ||| | || | ||||| | ||||| || ||| Sbjct 509992 ATACAGAAGGAATCTACTTTACACTTAGTACTACGTCTGAGAGGTGGT 510039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764316042080