Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13 185 8e-42 >seq13 Length=2073822 Score = 185 bits (204), Expect = 8e-42 Identities = 930/1465 (63%), Gaps = 34/1465 (2%) Strand=Plus/Minus Query 37167 TGTA-TATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATG 37225 |||| || ||||| || || || || |||| || || || || | | |||||||| | Sbjct 560431 TGTAGTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAG 560372 Query 37226 TAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTC 37285 |||||||||| ||||| || || | |||||| ||| ||||| || || | |||||| Sbjct 560371 TAGATGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTT 560312 Query 37286 TCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAA----CCACATATCA 37341 | || ||||||| ||| ||||| | | | || | | |||| |||||| ||| Sbjct 560311 TTGCCTTCAGTTCATCCCAGTCCCA-ATACTTCTTATCTACCTTAACATTCCACATGTCA 560253 Query 37342 TATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATT 37401 | || || || |||| || |||||| | | || |||||||| ||||| || | Sbjct 560252 AACTGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCCATACAGC 560193 Query 37402 TTAGCTAGTTCGCAACTAGA-TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTAT 37460 | || || || || | | ||| | || ||||||| || || ||||||||| | | Sbjct 560192 TGGGCCAGCTC-CATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTT 560134 Query 37461 ATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGC 37520 |||| ||| || || ||| | | ||| | || | || || || || Sbjct 560133 GTTTAGCTCTTTAGCAGAATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGC 560074 Query 37521 CAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTAT 37580 || ||||| ||||| || ||||||||||| ||| |||| || |||| | || Sbjct 560073 CAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTC 560014 Query 37581 CACTGGATAATAATTGATATCTATTATTTTATTTAGATT---TTTAACTAGTATTTTCGT 37637 ||| || || ||||| | ||||| |||| | | ||| ||| || ||||| || Sbjct 560013 CACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAA-TA--ATTTTGGT 559957 Query 37638 AATTATTCTCAACTTGTCGAACATAAATACGTTATT------ATTAACAAATTTACTCAA 37691 |||| | ||| | || ||||| | | || || || ||||| | || Sbjct 559956 AATTTCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAG 559897 Query 37692 CGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTC 37751 || || || | | || || || || ||||| || || | | ||| || || Sbjct 559896 CGCGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTC 559837 Query 37752 TGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACA 37811 ||||| || || || | || || |||||||| | ||||| ||||| |||||| Sbjct 559836 GCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACA 559777 Query 37812 AGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTT 37871 || ||||| || || || || || || |||||| ||| || | ||| | Sbjct 559776 GGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAA 559717 Query 37872 CCATAAACTTCTTGCTTTAACGATCGCTTTAAt-----ttttttCTTTGTTTCGTATTCT 37926 |||| | || ||| || || | ||| | | ||||||| || |||| Sbjct 559716 CCAT--AGGTCCTGC-GCAAGGACGGTTTTCTTGCCCATATTTTCTT--CCTCATATTTG 559662 Query 37927 ATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGA 37986 ||||||| || | || || | |||||| |||| || ||||||||||| || Sbjct 559661 GTATATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGG 559602 Query 37987 CACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCAT 38046 ||||| | || ||| | || || || | ||| | | |||||||| |||||||||||| Sbjct 559601 CACATCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCAT 559542 Query 38047 AATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT 38105 | || ||| || | ||| | | ||| ||||| || || ||| || | | | Sbjct 559541 ACGGC-GTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTC 559483 Query 38106 TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCT 38165 || ||| ||||| || || | |||||| ||||| || || | | | | ||| ||| Sbjct 559482 TAAAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGAACCTTTTCT 559423 Query 38166 TTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTAC 38225 || | || || || | | ||| ||| | |||| |||| | | || | ||| || || Sbjct 559422 CTTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGAC 559363 Query 38226 TATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACT 38285 || || || || ||||||| | || || || | | | | | |||| Sbjct 559362 TAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTACGAATTTTGCCCCCTAATATCCTG 559303 Query 38286 TATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTAT 38344 | | || ||| || ||||| || |||||| | || || || || || |||| || | Sbjct 559302 CACGGCCACTCCAATCCCACCAGC-CGTTTTGCTAATCAACGCACACTGCTTTAGAGTCT 559244 Query 38345 CAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAG 38404 ||||||| ||||| || ||| || || || | |||||| |||||| || | Sbjct 559243 CAAATATGCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTG 559184 Query 38405 GCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 || || || || | || || || ||||| | ||| || |||| | |||| |||| Sbjct 559183 GCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACA 559124 Query 38465 AATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCC 38524 || || || |||| | | | |||| ||| || ||| || || | |||||| | Sbjct 559123 TCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACTC 559064 Query 38525 TCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATT 38584 |||| |||| |||||| ||||| || || || || ||| | ||| || || || Sbjct 559063 TCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACC 559004 Query 38585 TTTCTAATGTTTTTATTCCAAAATA 38609 |||| ||||| || | ||||| || Sbjct 559003 TTTCCAATGTCTTAAACCCAAAGTA 558979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522609646560