Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq13 140 4e-28 >seq13 Length=2073822 Score = 140 bits (154), Expect = 4e-28 Identities = 797/1265 (63%), Gaps = 44/1265 (3%) Strand=Plus/Minus Query 65466 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGG 65525 || || ||||| ||||| ||||| ||||| || | || ||||| |||| || || Sbjct 560171 TCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTTAGCTCTTTAGC----AGA 560116 Query 65526 CTATCAAAT------GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCA 65579 |||| || ||||| | | || || || | |||||| | || || ||||| Sbjct 560115 --ATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCAGCCCCTGCACACCT 560058 Query 65580 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 65639 || || || ||||| |||||||| || || | || || | || || ||||| Sbjct 560057 ATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCACGGGGTAGTAATTC 559998 Query 65640 ATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA 65699 | |||||||||| | | ||| | | ||| | |||| | || | || || | Sbjct 559997 CTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTTCGTAGAGCTTCTTA 559938 Query 65700 AAATCAAAT-CGCTCATCT----ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTA 65753 || | |||| | ||| ||| || || || || || || | || |||| || Sbjct 559937 AAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGATGGAGGCCAAGTTG 559878 Query 65754 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 65813 || ||||| || || | | | | ||| | ||| || || ||| || || ||||| Sbjct 559877 CACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAGAGGTTGCTACAT 559818 Query 65814 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 65873 || ||||| || ||||||| ||||| || ||||| | || || || || ||| Sbjct 559817 TTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATG 559758 Query 65874 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 65933 | ||| ||| ||||| |||||| | | ||| || ||| | | | | || Sbjct 559757 TAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGGTCCTGCGCA--- 559701 Query 65934 ATTATAGATTTGTATCTCTT-TTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTCG 65990 | | | ||| | | | | || |||| | ||| | ||||| || |||||| || Sbjct 559700 AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCC 559641 Query 65991 TCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 66050 |||||||| | | ||| || |||||||||| ||| |||||||| | ||| | | Sbjct 559640 TCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTA 559581 Query 66051 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTG 66110 | ||||| |||| |||||||| || ||||| | ||| | || || | ||| || Sbjct 559580 TTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTC 559521 Query 66111 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAA 66170 | ||| | || || ||||| ||| || ||| || | || | | ||| || | Sbjct 559520 GCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAG 559461 Query 66171 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGG--CCGTT--TGTTTCCTCCC---TG 66223 ||||||||||| | ||| | || | ||| || || | ||||| ||| || Sbjct 559460 TGCCACGGTTCGATGTACACTGCGA-------AGGAACCTTTTCTCTTTCCCCCCCCTTG 559408 Query 66224 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 66283 |||| || ||||| |||| |||| |||| |||| |||||| | | || ||||| | Sbjct 559407 GTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAAT 559348 Query 66284 ACCATTGGTCCCGGAGATATA-GCTTCCACTTG--CACGAATATTACTAATTGATAGACC 66340 || || ||||| ||| || | | ||| | | ||||| | | | || Sbjct 559347 GCCGTTAGTCCCTCTGATGTACGAAT---TTTGCCCCCTAATATCCTGCACGGCCACTCC 559291 Query 66341 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 66400 || || || ||| |||| || || || || | |||| || ||| | ||||| || Sbjct 559290 AATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTC 559231 Query 66401 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 66460 || || ||||| || ||||||||| |||||| || | | || || Sbjct 559230 AATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCC 559171 Query 66461 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 66520 || ||| || || ||||| | ||||| || || | |||| ||| | |||| |||||| Sbjct 559170 CGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGATGGTACGT 559111 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 ||| | || |||| ||| | | || || || | | || | ||| | || || Sbjct 559110 CTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACTCTCATCAGCAAATG 559051 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 || ||||| |||| |||||| || ||| | | |||||| ||||||| || || Sbjct 559050 TTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTT 558991 Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 ||| ||||| |||| ||| ||| |||| | ||| ||| || || | | |||| Sbjct 558990 AAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCTCCTTATTCAATCTATC 558931 Query 66701 CTTAT 66705 ||||| Sbjct 558930 CTTAT 558926 Score = 138 bits (152), Expect = 1e-27 Identities = 366/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| ||| || || || |||| |||||||| || || || ||||||||| || Sbjct 1904637 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1904578 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGAAAATTCC 36282 | | | |||| |||| |||||| |||| | || | | ||| | ||| | || || Sbjct 1904577 AATTTGTTCTGCTTCTTAAACCAAAAGATGG-CACAGAAGCTCCCACTAAATAGGATGCC 1904519 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 36342 || || ||| ||| | | || ||| || || | | |||| |||||| || Sbjct 1904518 CTCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTT 1904459 Query 36343 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||| || || ||||| ||| || || | || || || | |||||||| Sbjct 1904458 GGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATT 1904399 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 36462 || | || || ||||| | || | |||||||| | || || | |||||||| Sbjct 1904398 CATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATG 1904339 Query 36463 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTT 36521 || || || | || ||||| || |||| ||| ||| |||||||| || | |||| Sbjct 1904338 GATATTCTCTACAGCAATTTGGAAGGCGTA-AAATTTCTTTGCCTCGGTTATTTTCACTT 1904280 Query 36522 CT-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 ||| ||| | | || |||| |||||| || ||||| |||||||||||||| || Sbjct 1904279 GGCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAG 1904221 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATA 36640 ||||| || |||||||| |||| |||||| || ||| ||| | |||| || | | Sbjct 1904220 GCCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAA 1904161 Query 36641 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 36700 || | || | || | ||| || | ||||| || || ||||| |||||||| || | | Sbjct 1904160 TCGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAA 1904101 Query 36701 TTCCAGATGTC 36711 | ||| | ||| Sbjct 1904100 TCCCAAACGTC 1904090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169723042160