Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13 100 3e-16 >seq13 Length=2073822 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||||||||||||| || ||||| | || || || || || ||||| ||||| Sbjct 509354 CCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAG 509295 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | ||||| || ||| | || || | ||||| ||||| || Sbjct 509294 AGAGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGA 509235 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||||| || | | ||| | ||||||| | |||||| Sbjct 509234 ATTCCCTCTTTGTCCTGTATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACA 509175 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | ||||| || || | ||| || || || ||||||||| Sbjct 509174 TCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCATA 509127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||||||||||||| || ||||| | || || || || || ||||| ||||| Sbjct 509582 CCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAG 509523 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | ||||| || ||| | || || | |||||||| || || Sbjct 509522 AGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 509463 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| |||| | ||| | | ||| | || |||| | || || Sbjct 509462 ATGCCCTCCTTGTC-CTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTAC 509404 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||| || || | ||| || || || ||||||||| Sbjct 509403 ATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCATA 509355 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | |||||||| | ||||| || || || ||||| || ||| Sbjct 510038 CCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGAT 509979 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | ||||| || ||| | || || | ||||||||||| || Sbjct 509978 AGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGA 509919 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || ||||| || ||||| ||| | | ||| | ||||||| | |||||| Sbjct 509918 ATTCCCTCTTTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACA 509859 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | ||||| || || | ||| || || || ||||||||| Sbjct 509858 TCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCATA 509811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061680900800