Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq13 203 5e-47 >seq13 Length=2073822 Score = 203 bits (224), Expect = 5e-47 Identities = 962/1511 (64%), Gaps = 27/1511 (2%) Strand=Plus/Minus Query 79092 GTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGA 79151 ||||||||||||||| || || || | |||||| || || |||| |||||||| ||| || Sbjct 560427 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 560368 Query 79152 TGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATC 79211 ||| || ||||| || || | | | ||| || | ||||| | ||||| | Sbjct 560367 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 560308 Query 79212 TTTTAGAGATTCCCAATCCCAA-AGATCAGACGGGAC--AACATTCCAAAGATCATATTG 79268 || || ||||| |||||| | || | | ||||||||| | ||| | || Sbjct 560307 CTTCAGTTCATCCCAGTCCCAATACTTCTTATCTACCTTAACATTCCACATGTCAAACTG 560248 Query 79269 TAGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGG 79327 || || || | ||||| | | |||| ||| || ||||| ||||| | | | || Sbjct 560247 AAGGATTCCTTGGCTAGCTGGACTCCCCTG-GTAGGTCTCATATGGTCCATACAGCTGGG 560189 Query 79328 CTAATTCACAACTCGCC---TCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 | | || || | | | || || || || ||||| ||||| |||||||| | || | Sbjct 560188 CCAGCTC-CA--TGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 560132 Query 79385 TGAGATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 | || |||| || | | | || | ||||| | | || || || | |||||| Sbjct 560131 TTAGCTCTTTAGCAGAATCAGAT-TCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCC 560073 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 | || || ||||| || || || ||||| |||||||| || || | || || Sbjct 560072 AGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCC 560013 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | || || ||||| | |||||||||| | | ||| | | || | |||| | Sbjct 560012 ACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATT 559953 Query 79564 TCCTTTAGTTTGAGAAAATCAAATCGTC-CATCT----ATT-ACAAACATGTTCAACGCG 79617 || | || || ||| | |||| || | ||| || || || || || |||| Sbjct 559952 TCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCG 559893 Query 79618 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTG 79677 | || |||| || || ||||| || || | | | | ||| | ||| ||||| | Sbjct 559892 ATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAG 559833 Query 79678 CAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 |||||||| ||||| || ||||| || ||||||| ||||| || ||||| | Sbjct 559832 CAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAG 559773 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797 || || || || ||| | ||| ||| ||||| |||||| | | ||| || ||| Sbjct 559772 TCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCAT 559713 Query 79798 ACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAAT 79857 | | | | || | | |||| | |||||| || |||| |||||||| Sbjct 559712 AGGTCCTGCGCAAGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATAAC 559653 Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917 |||||| || |||||||| ||| || || |||||||| | || |||||||| Sbjct 559652 TTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACATCAAA 559593 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 | ||| | | || |||||||||| |||||||| || ||||| | ||| | || Sbjct 559592 GTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAG 559533 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || ||||| || | ||| |||| || ||||| ||| || ||| || | || | Sbjct 559532 AACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCG 559473 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | ||| || || ||||||||||| | ||| | || | || | | | ||||| Sbjct 559472 AAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGAAGGAACC---TTTTCTCTTTCCC 559416 Query 80098 CCC---TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||| || |||| || ||||| |||| |||| |||| |||| |||||| | | || Sbjct 559415 CCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCG 559356 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG-GCACGAATATTACTAATTGA 80213 ||||| | || || ||||| ||| || | || | | ||||| | | Sbjct 559355 TTGGAAATGCCGTTAGTCCCTCTGATGTA-CGAATTTTGCCCCCTAATATCCTGCACGGC 559297 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || || || || ||| |||| || || || || | |||| || ||| | || Sbjct 559296 CACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATAT 559237 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 ||| || || || ||||| || ||||||||| |||||| || | | Sbjct 559236 GCCTTCAATTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGG 559177 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || |||| ||| || || ||||| | ||||| || || | |||| ||||| |||| Sbjct 559176 TGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGATG 559117 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||||||||| | || |||| ||| | | || || || | | || | ||| | Sbjct 559116 GTACGTCTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACTCTCATCAG 559057 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 || || || ||||| |||| |||||| ||| ||| | | ||| || ||||||| Sbjct 559056 CAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCAA 558997 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 || ||||| ||||| |||| ||| ||| |||| | ||| ||| || || | Sbjct 558996 TGTCTTAAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCTCCTTATTCAA 558937 Query 80574 TTTATCCTTAT 80584 | ||||||||| Sbjct 558936 TCTATCCTTAT 558926 Score = 156 bits (172), Expect = 6e-33 Identities = 370/551 (67%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 ||||| ||| || || || |||| ||||||| || || || ||||||||| || Sbjct 1904637 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1904578 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-CCCAGAAAAGAAGATTCC 50084 | | | |||| |||| |||||| |||| | || | | |||| ||| | ||| || Sbjct 1904577 AATTTGTTCTGCTTCTTAAACCAAAAGATGG-CACAGAAGCTCCCACTAAATAGGATGCC 1904519 Query 50085 TTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTT 50144 || || ||| ||| || | || ||| || || | | | |||| |||||| || Sbjct 1904518 CTCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTT 1904459 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 ||||| || || ||||| ||| || || |||| || || | |||||||| Sbjct 1904458 GGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATT 1904399 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 || | || || ||||| | ||| | || ||||| | || || | |||||||| Sbjct 1904398 CATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATG 1904339 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGCACTT 50323 || || || | || || || || |||| ||| ||| |||||||| || | ||||| Sbjct 1904338 GATATTCTCTACAGCAATTTGGAAGGCGTA-AAATTTCTTTGCCTCGGTTATTTTCACTT 1904280 Query 50324 CT-GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| ||| | | || |||| |||||| || ||||| |||||||||||||| || Sbjct 1904279 GGCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAG 1904221 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATA 50442 ||||| || |||||||| ||||||||||| || ||| ||| | |||| || | | Sbjct 1904220 GCCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAA 1904161 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 50502 || | || | || | ||| || | ||||| || || ||||| |||||||| || | | Sbjct 1904160 TCGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAA 1904101 Query 50503 TTCCAGATGTC 50513 | ||| | ||| Sbjct 1904100 TCCCAAACGTC 1904090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265442093360