Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 3e-15 >seq13 Length=2073822 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| ||||| | || | | |||| |||||||||||||||||||| Sbjct 510002 TCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAAT 509943 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 || | || ||| ||||||| || | || ||||| || ||| || |||| || | Sbjct 509942 ATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATC-CTGTATTTTGGCTTTCACATT 509884 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| |||||| | ||| || || | || || || ||||| || || || ||||| Sbjct 509883 TTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCAC 509824 Query 43098 AAAAATTTGCAT 43109 |||||||||||| Sbjct 509823 AAAAATTTGCAT 509812 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 || ||||| || | ||| ||||| || | |||||||| || | || | | |||| Sbjct 509339 AAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCT 509280 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||||||||||||||||||| || | || ||| || |||| || | || ||||| || Sbjct 509279 TCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTC- 509221 Query 43018 CTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 ||| || | || || | ||| |||||| | ||| || || | || || || Sbjct 509220 CTGTATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGT 509161 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || || ||||||||||||||||| Sbjct 509160 CTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367861669692