Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq13 190 3e-43 >seq13 Length=2073822 Score = 190 bits (210), Expect = 3e-43 Identities = 806/1259 (64%), Gaps = 32/1259 (3%) Strand=Plus/Minus Query 71428 TCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCT---TCC 71484 || || || |||||||| ||||| |||||||| | || || || |||| || || Sbjct 560171 TCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTTAGCTCTTTAGCAGAATCA 560112 Query 71485 GGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATA 71544 | || | ||||| | | || || || | |||||| | || || || || || Sbjct 560111 GAT---TCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCAGCCCCTGCACACCTATG 560055 Query 71545 CCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATA 71604 || || |||||||||||||| || || | || || | || || ||||| | Sbjct 560054 CCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCACGGGGTAGTAATTCCTC 559995 Query 71605 TCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAA 71664 |||||||||| | | ||| | | || | |||| | || | || || ||| Sbjct 559994 TCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTTCGTAGAGCTTCTTAAAG 559935 Query 71665 TCAAAT-CTCCCATCT----ATT-ACAAACACGTTCAAGGCAACAGATGCCAGATTACAA 71718 | |||| ||| | ||| || || || | || || | || |||| || || Sbjct 559934 TTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGATGGAGGCCAAGTTGCAC 559875 Query 71719 ACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTG 71778 ||||| || || | | | || ||| | ||| ||||| ||| || || ||||| || Sbjct 559874 ACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAGAGGTTGCTACATTTT 559815 Query 71779 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAAC 71838 ||||| || ||||||| ||||| || ||||| | || || || || || | Sbjct 559814 ATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATGTAG 559755 Query 71839 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 71898 ||| ||| ||||| |||||| | | ||| || ||| | | | | || | Sbjct 559754 GGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGGTCCTGCGCAAGGACG 559695 Query 71899 ATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 71958 | |||||| | |||||| || |||| |||||||| |||||| || |||||| Sbjct 559694 GTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCCTCTCCC 559635 Query 71959 CAAGCATTGTCT-AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATC 72017 || | ||| || || || |||||||||||||| |||||||| | ||| | | || || Sbjct 559634 CATG-ATTCGCTCAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTATTTTC 559576 Query 72018 ATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 72077 ||||||| |||||||| || ||||| | ||| | || || ||||| || | ||| Sbjct 559575 CTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCT 559516 Query 72078 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 72137 |||| || ||||| ||| || ||| || | || | | ||| || || ||||| Sbjct 559515 TAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCA 559456 Query 72138 CGGTTCCAAGTATATGGCCA--TAACTCCCGGCCGTT-TGTTTCCTCCC---TGATCTAT 72191 |||||| | ||| | || | ||| | || | ||||| ||| || |||| Sbjct 559455 CGGTTCGATGTACACTGCGAAGGAAC------CTTTTCTCTTTCCCCCCCCTTGGTCTAC 559402 Query 72192 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 72251 || ||||| |||| |||| |||| |||| |||||| | | || ||||| || || Sbjct 559401 ATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAATGCCGTT 559342 Query 72252 GGTCCCGGAGATATAGCTTCCACTG-GCACGAATAT--TGCTAATTGATAGACCTATTCC 72308 ||||| ||| || | || | | ||||| ||| | | | || || || Sbjct 559341 AGTCCCTCTGATGTA-CGAATTTTGCCCCCTAATATCCTGC--ACGGCCACTCCAATCCC 559285 Query 72309 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 72368 || ||| |||| || || || || | |||| || ||| | ||||| || || Sbjct 559284 ACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTCAATTGA 559225 Query 72369 ATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 72428 || ||||| || ||||||||| |||||| || | | || |||| ||| Sbjct 559224 GTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCGAATT 559165 Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 || || ||||| | ||||| || || | |||| ||||| |||| ||||||||| | Sbjct 559164 GAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGATGGTACGTCTCTAG 559105 Query 72489 AGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 || |||| ||| | | || || || | | || | ||| | || ||| || || Sbjct 559104 TGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACTCTCATCAGCAAATGTTGCGG 559045 Query 72549 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 72608 ||| |||| |||||| ||| ||| | | |||||| ||||||| || ||||| || Sbjct 559044 TCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTTAAACCC 558985 Query 72609 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTAT 72667 ||| |||| ||| ||| |||| | ||| ||| || ||| | | ||||||||| Sbjct 558984 AAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCTCCTTATTCAATCTATCCTTAT 558926 Score = 127 bits (140), Expect = 3e-24 Identities = 360/545 (66%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 ||||| ||| || || ||||||| |||||||| || || || ||||||||| || Sbjct 1904637 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1904578 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCC-AGAAAAGAAGATTCC 42189 | | | |||| |||| |||||| || | | || | | ||| | ||| | ||| || Sbjct 1904577 AATTTGTTCTGCTTCTTAAACCAAAAGATGG-CACAGAAGCTCCCACTAAATAGGATGCC 1904519 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 42249 || || ||| ||| | | || ||| || || | | |||| |||||| || Sbjct 1904518 CTCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTT 1904459 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||| || || ||||| ||| || || |||| || || | |||||||| Sbjct 1904458 GGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATT 1904399 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 || | || || ||||| | || | || ||||| | || || | || ||||| Sbjct 1904398 CATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATG 1904339 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTG-GCCTCGGTAACCTGTACTT 42428 || || || | || || || || |||| ||| ||| |||||||| | | |||| Sbjct 1904338 GATATTCTCTACAGCAATTTGGAAGGCGTA-AAATTTCTTTGCCTCGGTTATTTTCACTT 1904280 Query 42429 CT-GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAAC 42487 ||| ||| | | || |||| |||||| || ||||| |||||||||||||| || Sbjct 1904279 GGCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAG 1904221 Query 42488 GCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATA 42547 ||||| || |||||||| |||| |||||| | ||||||| | |||| || | | Sbjct 1904220 GCCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAA 1904161 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 || | || | || | ||| || ||||||| || || || || |||||||| || | | Sbjct 1904160 TCGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAA 1904101 Query 42608 TTCCA 42612 | ||| Sbjct 1904100 TCCCA 1904096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136062424240