Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq13 122 7e-23 >seq13 Length=2073822 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||||||| | ||| ||||| ||||| || ||||| || || ||||||||||| Sbjct 509582 CCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAG 509523 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||||||||||| |||||| |||| || ||||| ||||| ||| Sbjct 509522 AGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 509463 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| || ||||| |||||| |||||| | | | || |||| | ||| Sbjct 509462 ATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACA 509403 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || ||||| || || || | ||| || |||||||||||||| Sbjct 509402 TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509356 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| | | ||||| ||||| || ||||| || || |||||||||||| Sbjct 509810 CCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAG 509751 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||||||||||||| |||||| |||| || ||||| ||||| ||| Sbjct 509750 AGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGA 509691 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||| || ||||| |||||| |||||| | | | || |||| | ||| Sbjct 509690 ATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACA 509631 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || ||||| || || || | ||| || |||||||||||||| Sbjct 509630 TCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509584 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||||||| | ||| ||||| ||||| || ||||| || || ||||||||||| Sbjct 509354 CCACCTCGTAAACGCAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAG 509295 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||||||||||||||| ||| | ||||| ||||| || ||| ||| Sbjct 509294 AGAGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGA 509235 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| ||||| ||||| | ||| | ||| | ||| Sbjct 509234 ATTCCCTCTTTGTCCTGTATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACA 509175 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||| || || || | ||| || |||||||||||||| Sbjct 509174 TCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509128 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| | | ||||| ||||| || ||||| || || |||||||||||| Sbjct 509126 CCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAG 509067 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||||||||||||| |||||| |||| || ||||| || ||| ||| Sbjct 509066 AGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGGGGA 509007 Query 20102 ACGCCTTCTTTGTC 20115 | || |||||||| Sbjct 509006 ATTCCCTCTTTGTC 508993 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || || |||| |||||||| || ||||||||||| ||| | ||| | |||||| Sbjct 510020 ACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCC 509961 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||||||| ||| | || || ||||| |||||| ||| | || ||||| || Sbjct 509960 AATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCCTGT 509901 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| |||||| | ||| | ||| | ||| || | ||| ||||| || Sbjct 509900 ATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTT 509841 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||| || |||||||||||||| Sbjct 509840 CCCGTAAGCGTCTTCACAAAAATTTGCAT 509812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419585287469094