Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13 105 6e-18 >seq13 Length=2073822 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | || ||||| |||||||||||||| || | ||| || ||| Sbjct 510038 CCACCTCTCAGACGTAGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCG--G 509981 Query 94841 ATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| || | || |||| ||||| ||| |||| || | ||| |||||||| || | Sbjct 509980 ATAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGG 509921 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || ||||| || | ||||| || || || | | ||||| | || | Sbjct 509920 GAATTCCCTCTTTATCCTGTATTTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCA 509861 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| |||||||| ||||| ||||| || |||||||| || ||||| Sbjct 509860 CATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTTCACAAAAATTTGCAT 509812 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| || || | |||||||| | || |||||||| || | Sbjct 509139 AAAAATTTGCATACCACCTCTTAAACGTAGGACCAAGTGTAGGGTGGATTCCTTCTGGAT 509080 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| |||||| | ||| | ||| |||| |||||||| |||| || | ||| || Sbjct 509079 GTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAAAATGAGTCTCTG 509020 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || || ||||| || |||||||| | ||||| | ||| || | | ||||| Sbjct 509019 CTGGTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTCGACTTTACATTCTCAATTGTGTC 508960 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | |||||||| | |||||||||||||| Sbjct 508959 CGATGACTCGACGTCCAAGGTGATGGTTTTTCC 508927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289104238640