Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq13 131 2e-25 >seq13 Length=2073822 Score = 131 bits (144), Expect = 2e-25 Identities = 953/1525 (62%), Gaps = 55/1525 (4%) Strand=Plus/Minus Query 62369 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62428 ||||||||||||||| ||||| || | ||| || || || |||| |||||||| ||| || Sbjct 560427 GTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGAAGTAGA 560368 Query 62429 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62488 |||||||||||| || || | | | ||| || | ||||| | | ||||| | Sbjct 560367 TGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAATTTTTGC 560308 Query 62489 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTAC---AACNNNNNNNNNNNNNNNTTG 62545 || || ||||| | |||| | | ||| ||| || Sbjct 560307 CTTCAGTTCATCCCAGTCCCAATACTTCTTATCTACCTTAACATTCCACATGTCAAACTG 560248 Query 62546 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAG 62604 || || || | || || | || ||| || || || |||||||| | | || | Sbjct 560247 AAGGATTCCTTGGCTAGCTGGACTCCCCTGG-TAGGTCTCATATGGTCCATACAGCTGGG 560189 Query 62605 CTAGTTCACAACTCGCC---TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTAT 62661 | || || || | | | || || ||||| ||||| ||||| ||||| || | || | Sbjct 560188 CCAGCTC-CA--TGGACATTTCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGT 560132 Query 62662 TTAGATCTTGTGCTTCCAGGCTATCAAAT------GGATAATTTAAGAGAATAAACGCGT 62715 |||| |||| || || |||| || ||||| | | || || || | || Sbjct 560131 TTAGCTCTTTAGC----AGA--ATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGT 560078 Query 62716 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62775 | || | || || ||||| || || || ||||| |||||||| || || | || | Sbjct 560077 CTGCCAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCT 560018 Query 62776 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62835 | | || || ||||| | |||||||||| | | ||| | | ||| | |||| Sbjct 560017 CCTCCACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGG 559958 Query 62836 CCACATCCTTCAGTTTGAGAAAATCAAAT-CGCCCATCT----ATT-ACAAACATGTTCA 62889 | || | || || ||| | |||| | | | ||| || || || || || Sbjct 559957 TAATTTCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACA 559898 Query 62890 AGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCT 62949 || | || |||| || || ||||| || || | | | | ||| | ||| || | Sbjct 559897 GCGCGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTT 559838 Query 62950 CAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTAC 63009 | ||| || || ||||| || || || || ||||||| ||||| || |||| Sbjct 559837 CGCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTAC 559778 Query 63010 ACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTT 63069 | | || || || || ||| | ||| ||| ||||| |||||| | | ||| || Sbjct 559777 AGGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAA 559718 Query 63070 TCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT-TTCTCTTTCGTATAGT--G 63126 ||| | | | | || | | | ||| | | | | || |||| | ||| | | Sbjct 559717 ACCATAGGTCCTGCGCA---AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGG 559661 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186 |||| || |||||| || |||||||| | | ||| || |||||||||| ||| | Sbjct 559660 TATATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGC 559601 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 ||||||| | ||| | | | ||||| |||| |||||||| || ||||| | ||| | Sbjct 559600 ACATCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATA 559541 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 || || ||||| || | ||| | || || ||||| ||| || ||| || | Sbjct 559540 CGGCGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTA 559481 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG--CCG 63364 || | | ||| || || ||||||||||| | ||| | || | ||| || Sbjct 559480 AAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACACTGCGA-------AGGAACCT 559428 Query 63365 TT--TGTTTCCTCCC---TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419 || | ||||| ||| || |||| || ||||| |||| |||| |||| |||| |||| Sbjct 559427 TTTCTCTTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATT 559368 Query 63420 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG-GCACGAAT 63478 || | | ||||| || || || || || || ||| || | || | | ||| Sbjct 559367 GGGACTAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTA-CGAATTTTGCCCCCTAAT 559309 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 || | | | || || || || ||| |||| || || || || | |||| Sbjct 559308 ATCCTGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAG 559249 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGA--TCATGTTAAGTAGAAAACAGCTAGAC 63596 || ||| | || || || || || ||| ||||| || ||||||||| |||| Sbjct 559248 AGTCTCAAATATGCCTTCAATTGAGTC--CGATTTCATGCAGAGGAGAAAACAGGAAGAC 559191 Query 63597 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 63656 || || | | || |||| ||| || || ||||| | ||||| || || | ||| Sbjct 559190 ATCTGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTT 559131 Query 63657 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63716 | ||| | |||| ||||||||| | || |||| ||| | | || || || | Sbjct 559130 TGAGACATCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATA 559071 Query 63717 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 63776 | || | ||| | || || || ||||| |||| |||||| || ||| | | | Sbjct 559070 GATACTCTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGG 559011 Query 63777 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63836 ||||| ||||||| || ||||| ||||| |||| ||| ||| |||| | ||| | Sbjct 559010 TAGGACCTTTCCAATGTCTTAAACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCA 558951 Query 63837 ATAACCGAGTTGAGTTTATCCTTAT 63861 || || || | | ||||||||| Sbjct 558950 ATCTCCTTATTCAATCTATCCTTAT 558926 Score = 131 bits (144), Expect = 2e-25 Identities = 353/535 (66%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| ||| || || || |||| ||||||| || || || ||||||||| || Sbjct 1904637 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1904578 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 | | | |||| |||| |||||| |||| | ||| ||| ||| | ||| || Sbjct 1904577 AATTTGTTCTGCTTCTTAAACCAAAAGATGGCACAGAAGCTCCCACTAAATAGGATGCCC 1904518 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33489 || || ||| ||| | | || ||| || || | | | |||| |||||| || Sbjct 1904517 TCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTTG 1904458 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 ||||| || || ||||| ||| || || |||| || || | |||||||| Sbjct 1904457 GCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATTC 1904398 Query 33550 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33609 || | || || ||||| | ||| | || ||||| | || || | |||||||| Sbjct 1904397 ATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATGG 1904338 Query 33610 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA-GCCTCGGTAATCTGTACTTC 33668 || || || | || || || || |||| ||| ||| |||||||| || | |||| Sbjct 1904337 ATATTCTCTACAGCAATTTGGAAGGCGTA-AAATTTCTTTGCCTCGGTTATTTTCACTTG 1904279 Query 33669 T-GTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33727 ||| ||| | | || || | |||||| || ||||| |||||||||||||| || | Sbjct 1904278 GCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGG 1904220 Query 33728 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33787 |||| || |||||||| |||| |||||| | ||| ||| | |||| || | || Sbjct 1904219 CCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAAT 1904160 Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | | || | || | ||| || | ||||| || || ||||| |||||||| || Sbjct 1904159 CGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTA 1904105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944287721840