Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 seq11 86.0 5e-12 >seq13 Length=2073822 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || ||||| |||||||| ||||| ||| | || |||||| | Sbjct 509812 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509871 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| ||||| |||||||| || | ||| |||||| Sbjct 509872 GACACGATTGAAAATGTGAAAGCCAAAATACAGGATAAAGAGGGAATTCCCCCCGATCAG 509931 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| || | ||| ||||||||||| ||||| | | |||| | |||| || ||| Sbjct 509932 CAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACAAC 509991 Query 115466 ATTCAAAAAGAGTCTACTATACA 115488 || || || || |||||| |||| Sbjct 509992 ATACAGAAGGAATCTACTTTACA 510014 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || ||||| |||||||| ||||| ||| | || |||||| | Sbjct 509128 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509187 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || || ||||| || ||||| || | ||| || ||| Sbjct 509188 GACACGATTGAAAATGTGAAGGCCAAAATACAGGACAAAGAGGGAATTCCCCCCGACCAG 509247 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || |||||||| | ||| ||||||||||| ||||| | | ||| | | ||||| ||| Sbjct 509248 CAGAGACTTATATTTGCCGGCAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509307 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || || || |||| |||| ||| | || ||||| || Sbjct 509308 ATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 509354 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || ||||| || ||||| ||||| || | || || || | Sbjct 509356 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509415 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| | | | | || ||| |||||| || || || ||| | ||| ||||||| Sbjct 509416 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509475 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| |||| |||||| |||||||| ||||| | | ||| | | ||||| ||| Sbjct 509476 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509535 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || || || |||| |||| ||| | || ||||| || Sbjct 509536 ATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 509582 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || ||||| || ||||| ||||| || | || || || | Sbjct 509584 ATGCAAATTTTTGTGAAGACGCTAACAGGAAAGACCATCACTCTTGATGTAGAATCATCC 509643 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| | | | | || ||| |||||| || || || ||| | ||| ||||||| Sbjct 509644 GATACTATCGAAAATGTGAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 509703 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||||| |||| |||||| |||||||| ||||||| | ||| | ||||||| ||| Sbjct 509704 CAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTACAAC 509763 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || || || || || || |||| |||| Sbjct 509764 ATCCAGAAGGAATCCACCCTACACTTGGT 509792 >seq11 Length=2126511 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 ||||||||||| || || ||||| | || ||||||||||| ||| | || |||| | Sbjct 229756 AAAATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGCA 229815 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| || || | | || ||| |||||||| ||||| ||||| |||| ||| Sbjct 229816 TCCGAAACGATTAGGAACGTTAAATCAAAAATTGAAGATAAGGAAGGAATCCCACCTGAC 229875 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || ||| | || || || || || |||| || |||| || || Sbjct 229876 CAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGACTAC 229935 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||| || || ||||| || Sbjct 229936 AACATCCAGAAGGAGTCCAC 229955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425342061228880