Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq13 141 1e-28 >seq13 Length=2073822 Score = 141 bits (156), Expect = 1e-28 Identities = 796/1263 (63%), Gaps = 40/1263 (3%) Strand=Plus/Minus Query 62477 TCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGG 62536 || || ||||| ||||| ||||| ||||| || | || ||||| |||| || || Sbjct 560171 TCCAACGCACCATAATACATGGTCTCGAAAATTCTTTTGTTTAGCTCTTTAGC----AGA 560116 Query 62537 CTATCAAAT------GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCA 62590 |||| || ||||| | | || || || | |||||| | || || ||||| Sbjct 560115 --ATCAGATTCGTAGGGATACCTCAGAAGCATGAAGGTGTCTGCCAGCCCCTGCACACCT 560058 Query 62591 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62650 || || || ||||| |||||||| || || | || || | || || ||||| Sbjct 560057 ATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTTGGCCTCCTCCACGGGGTAGTAATTC 559998 Query 62651 ATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA 62710 | |||||||||| | | ||| | | ||| | |||| | || | || || | Sbjct 559997 CTCTCTATAATTTGGTCCAAATTGCGGGTAATAATTTTGGTAATTTCGTAGAGCTTCTTA 559938 Query 62711 AAATCAAAT-CGCCCATCT----ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTA 62764 || | |||| | | | ||| || || || || || || | || |||| || Sbjct 559937 AAGTTAAATTCTCTCTTCTCCACATCGACGAATTTGCACAGCGCGATGGAGGCCAAGTTG 559878 Query 62765 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 62824 || ||||| || || | | | | ||| | ||| || || ||| || || ||||| Sbjct 559877 CACACGGCCACTTCGTCGGGAGAGGTATACTCTATGATTTCGCAGCAGAGGTTGCTACAT 559818 Query 62825 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 62884 || ||||| || ||||||| ||||| || ||||| | || || || || ||| Sbjct 559817 TTTATGGTGCCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATG 559758 Query 62885 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 62944 | ||| ||| ||||| |||||| | | ||| || ||| | | | | || Sbjct 559757 TAGGGAACACCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGGTCCTGCGCA--- 559701 Query 62945 ATTATAGATTTGTATCTCTT-TTCTCTTTCGTATAGT--GTATACAATCGTTCGAACTCG 63001 | | | ||| | | | | || |||| | ||| | ||||| || |||||| || Sbjct 559700 AGGACGGTTTTCTTGCCCATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCC 559641 Query 63002 TCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63061 |||||||| | | || || |||||||||| ||| |||||||| | ||| | | Sbjct 559640 TCTCCCCATGATTCGCTCAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTA 559581 Query 63062 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63121 | ||||| |||| |||||||| || ||||| | ||| | || || ||||| || Sbjct 559580 TTTTCCTTTACTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTC 559521 Query 63122 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63181 | ||| | || || ||||| ||| || ||| || | || | | ||| || || Sbjct 559520 GCTCTTAGCTCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAG 559461 Query 63182 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGG--CCGTT--TGTTTCCTCCC---TG 63234 ||||||||||| | ||| | || | ||| || || | ||||| ||| || Sbjct 559460 TGCCACGGTTCGATGTACACTGCGA-------AGGAACCTTTTCTCTTTCCCCCCCCTTG 559408 Query 63235 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 63294 |||| || ||||| |||| |||| |||| |||| |||||| | | || ||||| | Sbjct 559407 GTCTACATACCTAGCAGTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAAT 559348 Query 63295 ACCATTGGTCCCTGAGATATAGCTTCCACTG-GCACGAATATTACTAATTGATAGACCTA 63353 || || |||||| ||| || | || | | ||||| | | | || | Sbjct 559347 GCCGTTAGTCCCTCTGATGTA-CGAATTTTGCCCCCTAATATCCTGCACGGCCACTCCAA 559289 Query 63354 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 63413 | || || ||| |||| || || || || | |||| || ||| | ||||| || | Sbjct 559288 TCCCACCAGCCGTTTTGCTAATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTCAA 559229 Query 63414 TACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 63473 | || ||||| || ||||||||| |||||| || | | || |||| Sbjct 559228 TTGAGTCCGATTTCATGCAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCG 559169 Query 63474 CATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63533 ||| || || ||||| | ||||| || || | |||| ||| | |||| |||||||| Sbjct 559168 AATTGAACAACGTAGGTGTTGCGTGGGTGAAATACTTTTGAGACATCAGATGGTACGTCT 559109 Query 63534 CAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63593 | | || |||| ||| | | || || || | | || | ||| | || || | Sbjct 559108 CTAGTGCCTTCTCTAGATCTCCTATGTGGATCCCAATAGATACTCTCATCAGCAAATGTT 559049 Query 63594 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63653 | ||||| |||| |||||| || ||| | | |||||| ||||||| || |||| Sbjct 559048 GCGGTCTCTCAATGATCTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTTAA 558989 Query 63654 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCT 63713 | ||||| |||| ||| ||| |||| | ||| ||| || || | | |||||| Sbjct 558988 ACCCAAAGTAGTCGTAATTAAAATCTCTTGTGTAGTCAATCTCCTTATTCAATCTATCCT 558929 Query 63714 TAT 63716 ||| Sbjct 558928 TAT 558926 Score = 134 bits (148), Expect = 2e-26 Identities = 363/550 (66%), Gaps = 4/550 (1%) Strand=Plus/Minus Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| ||| || || || |||| |||||||| || || || ||||||||| || Sbjct 1904637 AAATCTGTGTGGAGCCCTTCATCTCGGCTAATTAACTCATTACTGAAGGTGAGTCCGTGC 1904578 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC-AGAAAAGAAAATTCC 32785 | | | |||| |||| |||||| |||| | || | | ||| | ||| | || || Sbjct 1904577 AATTTGTTCTGCTTCTTAAACCAAAAGATGG-CACAGAAGCTCCCACTAAATAGGATGCC 1904519 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 32845 || || ||| ||| | | || ||| || || | | | |||| |||||| || Sbjct 1904518 CTCCACACATGCATTGGCTACTATCCTTTCTGCAAAAGAGTTGGTATCATTTATCCATTT 1904459 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||| || || ||||| ||| || || | || || || | |||||||| Sbjct 1904458 GGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAATCGCGTGAAAGAGATT 1904399 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 || | || || ||||| | || | |||||||| | || || | |||||||| Sbjct 1904398 CATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGCTGTATGTCTCCGAATG 1904339 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 || || || | || ||||| || |||| || | |||||||| || | |||| Sbjct 1904338 GATATTCTCTACAGCAATTTGGAAGGCGTAAAATTTCTTTGCCTCGGTTATTTTCACTTG 1904279 Query 33026 T-GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 ||| ||| | | || |||| |||||| || ||||| |||||||||||||| || | Sbjct 1904278 GCGTAAAAATTTGCTC-GCTAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGG 1904220 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33144 |||| || |||||||| |||| |||||| | ||| ||| | |||| || | || Sbjct 1904219 CCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAAT 1904160 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | | || | || | ||| || | ||||| || || ||||| |||||||| || | || Sbjct 1904159 CGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAAT 1904100 Query 33205 TCCAGATGTC 33214 ||| | ||| Sbjct 1904099 CCCAAACGTC 1904090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629037770400