Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq13 107 1e-18 seq11 86.0 4e-12 >seq13 Length=2073822 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | ||||| || ||||| ||| | || ||| | | Sbjct 509128 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509187 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| ||||| || |||||||| | || |||| Sbjct 509188 GACACGATTGAAAATGTGAAGGCCAAAATACAGGACAAAGAGGGAATTCCCCCCGACCAG 509247 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||| ||||| ||||||||| | ||||| || |||| | | |||||||| Sbjct 509248 CAGAGACTTATATTTGCCGGCAAACAATTGGAAGACGGAAGAACTCTCTCGGATTACAAC 509307 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| || || || |||| || ||||||||||| || Sbjct 509308 ATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 509354 Score = 95.1 bits (104), Expect = 9e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| |||||||| || ||||| || |||||| | |||||| || |||| | |||||| Sbjct 509015 ACCAGCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATT 509074 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||| || ||||||||||| || || || |||| |||||||| |||| || Sbjct 509075 ACAACATCCAGAAGGAATCCACCCTACACTTGGTCCTACGTTTAAGAGGTGG 509126 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| || ||||| || |||||| | |||||| || |||| | |||||||| Sbjct 509701 CAGCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGATGGAAGAACTCTCTCCGATTAC 509760 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||| || || || |||| |||||||| |||| || Sbjct 509761 AACATCCAGAAGGAATCCACCCTACACTTGGTCCTACGTTTAAGAGGTGG 509810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | ||||| || ||||| ||| | || ||| | | Sbjct 509812 ATGCAAATTTTTGTGAAGACGCTTACGGGAAAGACCATCACCCTTGATGTGGAGTCATCC 509871 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || ||||| ||||||||||| | || | || Sbjct 509872 GACACGATTGAAAATGTGAAAGCCAAAATACAGGATAAAGAGGGAATTCCCCCCGATCAG 509931 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| || ||||| ||||||||| | ||||| || ||| | |||| ||||| Sbjct 509932 CAGAGACTCATATTTGCCGGCAAACAATTGGAAGACGGAAGAACCCTATCCGACTACAAC 509991 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAAT 22068 || ||||||||||||||| | || | ||| ||||| | |||| || | ||||| Sbjct 509992 ATACAGAAGGAATCTACTTTACACTTAGTACTACGTCTGAGAGGTGGTTTTTAAT 510046 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| || ||||| || |||||| | ||||| || |||| | | |||||| Sbjct 509473 CAGCAGAGACTCATTTTTGCGGGAAAACAATTGGAAGACGGAAGAACTCTCTCGGATTAC 509532 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||| || || || |||| || ||||||||||| || Sbjct 509533 AACATCCAGAAGGAATCCACCCTACACTTGGTCTTGCGTTTACGAGGTGG 509582 >seq11 Length=2126511 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||||||||| | ||||||||||| || |||||||| ||| |||| ||| || Sbjct 229755 CAAAATGCAAATATTCGTAAAAACATTAACCGGAAAAACCATCACCCTGGATGTGGAGGC 229814 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGT 21946 | |||||| | | |||| |||||||| ||||| || || | ||||| Sbjct 229815 ATCCGAAACGATTAGGAACGTTAAATCAAAAATTGAAGATAAGGAAGGAATCCCACCTG- 229873 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 |||| ||||| || || | | | || || || | || ||| | | | |||| || Sbjct 229874 --ACCAGCAGAGGCTAATATATTCAGGAAAGCAGTTGGAGGATGTCAGGTTTGTGGCTGA 229931 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||| || |||||||| || || || || ||||| Sbjct 229932 CTACAACATCCAGAAGGAGTCCACCCTGCACTTGGTA 229968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358123167622396