Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13 134 3e-26 >seq13 Length=2073822 Score = 134 bits (148), Expect = 3e-26 Identities = 984/1569 (63%), Gaps = 60/1569 (4%) Strand=Plus/Minus Query 243892 CTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGA--GATATC 243949 |||||||| ||||| |||| || || ||||| ||||| || |||||| ||| || Sbjct 560664 CTGGTCGATGAAGGCGCCCCGGTCGGCCGCCATATCGATGATGTTCTTCTGCTTGATCTC 560605 Query 243950 TCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCG---ATGTTCTGC 244006 || ||| ||||| |||| ||| | || |||| | |||| |||| || Sbjct 560604 CCAGACG--GTCTTATAGAGCTCCTTCAAGTCGGCGGGAAT---TTCGCTAATGTATTGG 560550 Query 244007 ACCGAGCCCTTGTGGACGATGAGCTGGGTGCG-CATGTTATCGTTCCACAGGCCCAAGCG 244065 || || ||||| |||||||||| ||| ||||| || | ||| ||||| ||| Sbjct 560549 ACACTCCCGTTGTGCGCGATGAGCTGC-TGCTTCATGTCCTCATCCCAGAGGCC---GCG 560494 Query 244066 CTCCA---GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCG 244122 || | | ||| | |||||| ||||||||| |||||||| || || || Sbjct 560493 GTCGAAGAGGTCCTTCAGCAGGTGGGGGTTCACCACGAAGAACTCTCCACTGAGGACCCG 560434 Query 244123 GCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGC 244182 | | ||| | || ||| || |||||| | || |||| ||||| || || | Sbjct 560433 CCTGTAGTAAATATTACTGGTGTACGGCTCAAACGATTCGTTGTTCCCCAGAATTTGAGA 560374 Query 244183 CGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT 244242 || |||||||||||||| | | || || ||||||| |||||| ||| || Sbjct 560373 AGTAGATGCAGTCGGCATGGGGGCAAGAAGAAGGGAATTCCTCAAACCGTGCTTCTTAAT 560314 Query 244243 GCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCA 244302 | || || | ||||||||| || | | | | || | ||| Sbjct 560313 TTTTGCCTTCAGTTCATCCCAGTCCCA-ATACTTCTTATCTACC-----TTAACATTCCA 560260 Query 244303 CATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACC 244362 |||||||||||| || | || | ||| | || || |||| ||||||| || || || Sbjct 560259 CATGTCAAACTGAAGGATTCCTTGGCTAGCTGGACTCCCCTGGTAGGTCTCATATGGTCC 560200 Query 244363 GTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 | |||||||||||| | | || | || | || || ||||||||||| || Sbjct 560199 ATACAGCTGGGCCAGCTCCATGGACATTTCCAACGCACCATAATACATGGTCTCGAAAAT 560140 Query 244423 CATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCC-CATCATCATGAA 244479 | ||||| | || || | ||| | | |||| || || || | |||||| Sbjct 560139 TCTTTTGTTTAGCTCTTTAGCA--GAATCAGATTCGTAGGG-ATACCTCAGAAGCATGAA 560083 Query 244480 GACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCAT 244539 | ||| ||||| |||||||| || ||||| ||||||||||||| ||||||||| ||| | Sbjct 560082 GGTGTCTGCCAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTTGTTGGATCGCTT 560023 Query 244540 GGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCAT 244599 ||| || ||||||||| | || | || || | | || | |||||||| || || Sbjct 560022 GGCCTCCTCCACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATTGCGGGTAATAAT 559963 Query 244600 GCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGAT 244659 | | ||| ||| || ||||| || || ||| | || Sbjct 559962 TTTGGTAATTTCGTAGAGCTTCTTAAAGT--TA--------AATTCTCTCTTCTCCACAT 559913 Query 244660 CCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTT 244719 | || || | | || |||| | ||||| |||||| |||||||| || || | Sbjct 559912 C--GACGAATTTGCACAGCGCGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAGA 559855 Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 ||| |||| | || ||| ||||||||| || || || |||||||||| | | || Sbjct 559854 GGTATACTCTATGATTTCGCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTG 559795 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||| || || || || |||| ||| ||||| |||||| |||| | || || || | ||| Sbjct 559794 ATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATCTG 559735 Query 244840 GGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-- 244897 || | | ||| |||||| || ||| || | ||||||| Sbjct 559734 ACTCTGCAGAATGGCAAACCATAGGTCCTGCGCAAGGACGGTTTT------CTTGCCCAT 559681 Query 244898 ----TCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG 244953 ||| |||| || ||| || | ||||| || ||||| ||| | Sbjct 559680 ATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCCTCTCCCCATGATTCGCTCAA 559621 Query 244954 GCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCAT 245013 || || || ||||||||| | | |||| | ||||| || |||| ||| Sbjct 559620 CCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTATTTTCCTTTACTCTCTTCAT 559561 Query 245014 GAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCC 245073 || ||||| || | ||| | ||| | ||| || ||||| | || |||| ||| || Sbjct 559560 AAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCTTAGCTCTTCCTTTCC 559501 Query 245074 AGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGA 245132 ||| || || | || || ||||| || || | ||| |||||| || || ||||| | Sbjct 559500 -GTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCACGGTTCGATGTACA 559442 Query 245133 CAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG-CGTTG 245191 | |||| || || | ||| || || ||||| || ||| | || | | || Sbjct 559441 CTGCGAAGGAACCTTTTCTCTTTCCCCCCCCTTGGTCTACATACCTAGC-AGTGTCATTA 559383 Query 245192 AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCG 245251 || | | ||| | || |||| ||||| || |||||| || || ||||||| | Sbjct 559382 AAAACCCTCAGCATTGGGACTAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTACG-A 559324 Query 245252 CCCTTGCCCCTGAGGTTGCTG-ATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAG 245310 ||||||| | | ||| | || || || | || || || ||| || | Sbjct 559323 ATTTTGCCCCCTAATATCCTGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTAATCAA 559264 Query 245311 GGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAG 245370 || || ||| | || || |||||| || || |||||| |||||| ||| || Sbjct 559263 CGCACACTGCTTTAGAGTCTCAAATATGCCTTCAATTGAGTCCGATTTCATGCAGAGGAG 559204 Query 245371 AAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTG 245430 ||| ||||| |||| ||| ||| |||| | | ||| ||||||| || || | ||||| Sbjct 559203 AAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTTGCGTG 559144 Query 245431 GGTAAAGTA 245439 ||| || || Sbjct 559143 GGTGAAATA 559135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334785214240