Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 131 4e-25 >seq13 Length=2073822 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || | ||| || | ||||||||| ||||||||||| || || Sbjct 509547 TTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCCGCAAA 509488 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||| ||| | || || || || || ||||| ||||| |||||||| || Sbjct 509487 AATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATT 509428 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| |||||||| || || ||||| ||||| || || || ||||| || Sbjct 509427 TTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCAC 509368 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 509367 AAAAATTTGCAT 509356 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || |||| ||| || | ||| ||||| ||||||||||| || || Sbjct 509775 TTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAA 509716 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | ||| ||| | || || || || || ||||| ||||| |||||||| || Sbjct 509715 AATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCTTTCACATT 509656 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| |||| |||||||| || || ||||| ||||| || || || ||||| || Sbjct 509655 TTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGTCTTCAC 509596 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 509595 AAAAATTTGCAT 509584 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||||| || || | ||||||||| |||||||| || || || Sbjct 510003 TTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCGGCAAA 509944 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | ||| ||| || ||| ||||| ||||||||||| ||||| |||||||| Sbjct 509943 TATGAGTCTCTGCTGA---TCGGGGGGAATTCCCTCTTTATCCTGTATTTTGGCTTTCAC 509887 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| || || || || || ||||| ||||| || || || ||||| Sbjct 509886 ATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTCTT 509827 Query 288459 GACGAATATCTGCAT 288473 || || || ||||| Sbjct 509826 CACAAAAATTTGCAT 509812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648747243572