Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 seq11 89.7 5e-13 >seq13 Length=2073822 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | || || | ||||||| | || |||||| Sbjct 509324 GTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTGCCG 509265 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || | |||||||||||| |||||||| ||||| || |||||||| ||| Sbjct 509264 GCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTGGCCTTC 509205 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | ||||| || | || | |||||| || || | || Sbjct 509204 ACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTC 509145 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 509144 TTCACAAAAATTTGCAT 509128 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||| | ||||||| | || |||||| Sbjct 510008 GTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCG 509949 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| | |||||| ||||| |||||||| ||||| || |||||||| ||||| Sbjct 509948 GCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCCTGTATTTTG-GCTTT 509890 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || | ||||| || | || | |||||| || || | || Sbjct 509889 CACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGT 509830 Query 64426 TTTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 509829 CTTCACAAAAATTTGCAT 509812 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | || || | | ||||| | || || || Sbjct 509096 GTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGTTTTCCC 509037 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| | |||||||||||| |||||||| ||||| || |||||||| |||| Sbjct 509036 GCAAAAATGAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTCGACTTT 508977 Query 64367 ACAACCTCCACTGTATC 64383 ||| ||| | ||| || Sbjct 508976 ACATTCTCAATTGTGTC 508960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | || || | ||||||| | || || || Sbjct 509552 GTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGTTTTCCC 509493 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| | |||||| || || ||||| || || || || || | |||| ||||| Sbjct 509492 GCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTG-AATTTTGGCTTT 509434 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||| | || || || | ||| | |||||| || || | || Sbjct 509433 CACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTTAGCGT 509374 Query 64426 TTTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 509373 CTTCACAAAAATTTGCAT 509356 >seq11 Length=2126511 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || || || | | || || | |||||| || Sbjct 229955 GTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTGCTTTCCT 229896 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 | ||| || |||| ||||||||| || || |||||||| || |||| |||||| | ||| Sbjct 229895 GAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCAATTTTT-GATTT 229837 Query 64367 ACAACCTCC--ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAG 64424 | | ||| | || || || ||||| || | || | ||| || ||||| || | Sbjct 229836 A-ACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGTTAATG 229778 Query 64425 TTTTTACGAAAATTTGCATTTT 64446 |||||||||| ||||||||||| Sbjct 229777 TTTTTACGAATATTTGCATTTT 229756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642464160560