Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 4e-14 >seq13 Length=2073822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 230/344 (67%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 153398 CAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTC 153457 ||| |||| |||| ||| ||||| ||||| | ||| | ||| ||||||| || ||| Sbjct 560094 CAGAAGCATGAAGGTGTCTGCCAGCCCCTGCACACCTATGCCTATGGGTCTGTGTCTCTT 560035 Query 153458 GTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTT 153517 |||| ||| | || | | | ||| |||| ||| | || ||||||| || | || Sbjct 560034 GTTGGATCGCTTGGCCTCCTCCACGGGGTAGTAATTCCTCTCTATAATTTGGTCCAAATT 559975 Query 153518 GCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG-TCATTTCGTCGA 153576 ||| | | ||| || || | | || |||| || | | | || ||| || | Sbjct 559974 GCGGGTAATAATTTTGGTAATTTCGTAGAGCTTCTTAAAGTTAAATTCTCTCTTC-TCCA 559916 Query 153577 CGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGT 153636 | ||| || || || || || |||| || || |||||| || |||| Sbjct 559915 CATCGACGAATTTGCACAGCGCGATGGAGGCCAAGTTGCACACGGCCACTTCGTCGGGAG 559856 Query 153637 CGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCT 153696 | | |||| | ||| ||| |||||||||||| ||||||||| ||||||||||| || Sbjct 559855 AGGTATACTCTATGATTTCGCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCT 559796 Query 153697 GATT-GCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| | ||| || ||| || | ||||||| | |||||||| || Sbjct 559795 GATTCGATTTAGC-ATTACAGGAGTCTTTGTACAGCATGTAGGG 559753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260079973280