Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 >seq13 Length=2073822 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || |||||| || ||| | ||| ||||||||| Sbjct 509786 TGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTGT 509727 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||||| || || |||||||| || || || |||||||| Sbjct 509726 TTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTG 509667 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | || ||||| || || || || ||||| | || || || ||| Sbjct 509666 GCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTT 509607 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 509606 AGCGTCTTCACAAAAATTTGCAT 509584 Score = 114 bits (126), Expect = 1e-20 Identities = 436/678 (64%), Gaps = 15/678 (2%) Strand=Plus/Plus Query 123618 CCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACA 123677 || |||||||| ||||||||| |||| || ||| | ||||||| || ||||| || Sbjct 559753 CCCTACATGCTGTACAAAGACTCCTGTAATGCTAAATCGAATCAGAAAAATTTGGGCACC 559812 Query 123678 ATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCC 123737 ||||||||||| || || |||| |||||| || || || | | | |||| |||||||| Sbjct 559813 ATAAAATGTAGCAACCTCTGCTGCGAAATCATAGAGTATACCTCTCCCGACGAAGTGGCC 559872 Query 123738 GTGTGTAATTTGGCTTCGAT-TTGC-GTG---AATCGTTG-CGTCGAAAACGGCGCTTTT 123791 ||||| || ||||| || || || ||| | |||| | || || || | | ||| Sbjct 559873 GTGTGCAACTTGGCCTCCATCGCGCTGTGCAAATTCGTCGATGTGGAGAAGAGAGAATTT 559932 Query 123792 AATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATC 123851 || || | | |||| | || || |||| | | |||||| || ||||||| Sbjct 559933 AACTTTAAGAAGCTCTACGAAATTACCAAAATTATTACCCGCAATTTGGACCAAATTATA 559992 Query 123852 GATGTTAATTTTTATCCTTTGGAGGAAGC---GCGTTTGTCTAATTTGAAACACAGACCG 123908 || |||| || || ||||||| || ||| || || || ||||||||| Sbjct 559993 GAGAGGAATTACTACCCCGTGGAGGAGGCCAAGCG---ATCCAACAAGAGACACAGACCC 560049 Query 123909 GTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAA 123968 | || | || | || ||| |||| ||| | || | | ||| | || |||||| Sbjct 560050 ATAGGCATAGGTGTGCAGGGGCTGGCAGACACCTTCATGCTTCTGAGGTATCCCTACGAA 560109 Query 123969 AGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTG 124028 || || || ||| || | ||| ||| || || ||||| || || ||| Sbjct 560110 TCTGATTCTGCTAAAGAGCTAAACAAAAGAATTTTCGAGACCATGTATTATGGTGCGTTG 560169 Query 124029 GAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCG 124088 || | | || || || | | | || | || || | ||| ||| || || Sbjct 560170 GAAATGTCCATGGAGCTGGCCCAGCTGTATGGACCATATGAGACCTACCAGGGGAGTCCA 560229 Query 124089 GCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTA---CACCGACAAATTTGTGG 124145 || |||| ||| || | |||| ||||||||||||| || | | || | ||| Sbjct 560230 GCTAGCCAAGGAATCCTTCAGTTTGACATGTGGAATGTTAAGGTAGATAAGAAGTATTGG 560289 Query 124146 GACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTG 124205 |||||| | | || | || || |||||||||| | || || || | | Sbjct 560290 GACTGGGATGAACTGAAGGCAAAAATTAAGAAGCACGGTTTGAGGAATTCCCTTCTTCTT 560349 Query 124206 GCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCG 124265 || ||||||||| ||| | ||| |||||||| | || ||||||||||| || |||||| Sbjct 560350 GCCCCCATGCCGACTGCATCTACTTCTCAAATTCTGGGGAACAACGAATCGTTTGAGCCG 560409 Query 124266 TTCACTAACAATTTGTAC 124283 | ||| | ||| | ||| Sbjct 560410 TACACCAGTAATATTTAC 560427 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || ||||| || ||| | || ||||||||| Sbjct 509558 TGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGT 509499 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | || | || ||||| || || |||||||| || || || |||||||| Sbjct 509498 TTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTTG 509439 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | || ||||| || || || || ||||| | || || || ||| Sbjct 509438 GCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGTT 509379 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 509378 AGCGTCTTCACAAAAATTTGCAT 509356 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || ||||| || ||| | || ||||||||| Sbjct 509330 TGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTCTTCCAATTGT 509271 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || |||| | || |||||||| || ||||| || ||||| || || ||||| Sbjct 509270 TTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTCCTGTATTTTG 509211 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | ||| | |||||||| ||||| || || || || | || || || || Sbjct 509210 GCCTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTA 509151 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||||||||| Sbjct 509150 AGCGTCTTCACAAAAATTTGCAT 509128 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 || |||||||| || || || || ||| | |||| | || ||||||||||| || Sbjct 510008 GTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCTTCCAATTGTTTGCCG 509949 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || |||| | || ||||| || || ||||| || |||||||| || ||||| ||| Sbjct 509948 GCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCCTGTATTTTGGCTTTC 509889 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | |||||||| ||||| || || || || | || || || || || || Sbjct 509888 ACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGTCTTTCCCGTAAGCGTC 509829 Query 45324 TTTACAAAAATTTGCAT 45340 || |||||||||||||| Sbjct 509828 TTCACAAAAATTTGCAT 509812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001086885040