Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq13 129 1e-24 seq11 87.8 4e-12 >seq13 Length=2073822 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || || ||||| |||| |||||| || | | ||| ||||||||| Sbjct 509795 AGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCT 509736 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || ||||| || || ||||| | |||||| || || ||| || || ||| Sbjct 509735 TCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 509676 Query 199538 TGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| |||| ||| ||||| || || | || ||||||||| | ||||| || Sbjct 509675 TGAAT-TTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGT 509617 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||||||||| Sbjct 509616 CTTTCCTGTTAGCGTCTTCACAAAAATTTG 509587 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| | ||| || || || ||||| |||| |||||| || | | ||| ||||| || Sbjct 509340 CAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTC 509281 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| || || ||||| || || || | ||||||||| || |||||| ||| || Sbjct 509280 TTCCAATTGTTTGCCGGCAAATATAAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTC 509221 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| || || |||||| ||| | ||||| | || || ||||| | ||||| || Sbjct 509220 CTGTATTTTGGCCTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGT 509161 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || |||||||||||||| Sbjct 509160 CTTTCCCGTAAGCGTCTTCACAAAAATTTG 509131 Score = 122 bits (134), Expect = 2e-22 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| | ||| || || || ||||| |||| |||||| || | | ||| ||||| || Sbjct 509568 CAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTC 509509 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| || ||||| || || ||||| | |||||| || || ||| || || || Sbjct 509508 TTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 509449 Query 199537 CTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 |||||| ||| |||| ||| ||||| || || | || ||||||||| | ||||| | Sbjct 509448 CTGAAT-TTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGG 509390 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || || || |||||||||||||| Sbjct 509389 TCTTTCCTGTTAGCGTCTTCACAAAAATTTG 509359 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| | ||| || ||||| || | ||||||||| | | || ||||| ||| Sbjct 510023 AGTACTAAGTGTAAAGTAGATTCCTTCTGTATGTTGTAGTCGGATAGGGTTCTTCCGTCT 509964 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || || ||||| || ||||| | |||||| || || |||||| ||| ||| Sbjct 509963 TCCAATTGTTTGCCGGCAAATATGAGTCTCTGCTGATCGGGGGGAATTCCCTCTTTATCC 509904 Query 199538 TGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| |||| ||| ||| | ||||| | || || ||||| | ||||| || Sbjct 509903 TGTAT-TTTGGCTTTCACATTTTCAATCGTGTCGGATGACTCCACATCAAGGGTGATGGT 509845 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || |||||||||||||| Sbjct 509844 CTTTCCCGTAAGCGTCTTCACAAAAATTTG 509815 Score = 95.1 bits (104), Expect = 3e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || || ||||| |||| |||||| || | | ||| ||||||||| Sbjct 509111 AGGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCT 509052 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || ||||| || || ||||| | ||||||||| || |||||| ||| ||| Sbjct 509051 TCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGGTCGGGGGGAATTCCCTCTTTGTCC 508992 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| || || | ||||| | || || || ||||| ||||| || Sbjct 508991 TGTATTTTCGACTTTACATTCTCAATTGTGTCCGATGACTCGACGTCCAAGGTGATGGTT 508932 Query 199598 TTACC 199602 || || Sbjct 508931 TTTCC 508927 >seq11 Length=2126511 Score = 87.8 bits (96), Expect = 4e-12 Identities = 148/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || |||||||| |||| |||||||||||||| | ||| |||| |||| ||| Sbjct 229962 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTG 229903 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| | | || || | ||||||||| || |||||||| || | ||| || Sbjct 229902 CTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCAAT-TT 229844 Query 199546 TTGCTTCACGGATTC-GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 ||| || | | | | | || || | || || ||||||| ||||| || || || | Sbjct 229843 TTGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGG 229784 Query 199605 TGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | | ||||| || || ||||| |||||| Sbjct 229783 TTAATGTTTTTACGAATATTTG---CATTTT 229756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178915950755058