Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5 392 2e-103 seq7 188 5e-42 seq9 113 3e-19 >seq5 Length=1427117 Score = 392 bits (434), Expect = 2e-103 Identities = 1031/1549 (67%), Gaps = 46/1549 (3%) Strand=Plus/Plus Query 517196 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 517255 || |||||||| | ||| ||||| ||||||| || || || ||||| ||| Sbjct 585722 GACAATCTTCCCTTGTCATTCGTAATGGTAATATGATTCTGCTTTCCAGTGGATTTCTCA 585781 Query 517256 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 517315 | || || || ||||| |||||||||||||| | |||||| |||||||||||||| || Sbjct 585782 ACAGCGGTGACGTTAAGGATACCATTGGCATCAATATCAAAGGTGACTTCAATTTGGGGT 585841 Query 517316 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 517375 || || ||||||| ||||| || || | | |||| | |||| || || || Sbjct 585842 ACTTTCCTAGGAGCAGGGGGGATACCGTCTAGGTGAAATTTACCCAACAGGTTGTTGTCC 585901 Query 517376 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 517435 || || | || || || ||| | | |||||| || | | ||| ||||| | | Sbjct 585902 TTTGTTAGGGCTCTCTCTCCTTCGTACACTTGGATTAAGACACCTGGTTGGTTATCAGCA 585961 Query 517436 TAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATT 517494 || || ||||| | | ||| | || | | || || || |||||||| ||||| | || Sbjct 585962 TAGGTGGTAAAGATT-TGGCTCTTCTTCGCTGGGATGGTGGTGTTTCTCTCAATCAGCTT 586020 Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 |||||||| ||| ||||| ||||| ||||| || || |||| ||||| | |||| Sbjct 586021 GGTCATAACACCTCCTGCGGTTTCCAAACCGAGGGATAGAGAGCACACATCTAAGAGGAG 586080 Query 517555 AATATTTTGAA-GTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCA 517612 | || || | | || | | | |||| |||| ||| |||||||| | || ||| Sbjct 586081 TAAATCCTGCACGGCATTGGACTGATC-ACCAGACAA-AATGGCTGCTTGCACTGCTGCA 586138 Query 517613 CCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT--TTACCATTGAAAA 517670 ||||| || || ||||||||||| |||| | | | || || || |||||||||| Sbjct 586139 CCATACGCGACGGCTTCATCAGGGTTAATCGA--CCTGCAGGCTTCCTTTCCATTGAAAA 586196 Query 517671 AATTTGAAAGAAG---TTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 | | || || ||| || || ||||| | | || || || || | |||| Sbjct 586197 ACTCCTTAATGAGCGTTTGAATT---TTTGGAATTCTCGTGGAACCACCTACAAGGACAA 586253 Query 517728 TTTCATGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 ||| ||||| || | || ||||| | | ||| |||||||| || || || Sbjct 586254 CTTCGTGCACGCTCTTCTT-ATCCATCATGGCATCTTTCAAAACTTTCTCCACAGGAATG 586312 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || |||| || |||| ||| || || || ||| | ||||| | | || ||| Sbjct 586313 AGTGTGTCTCTGAAGTAGTCAATACATAGCTCCTCAAATCTGGCTCTGCTCACCGTCACA 586372 Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 | || ||||| ||||| || | ||||||| ||| || || | ||| || ||||| || Sbjct 586373 CTGTAGTCAATACCTTCAAAAAGGGAATCAATTTCGATGGTGGCTTGGGTGGAAGAGGAC 586432 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT-- 517964 | | ||| || || | |||||| || ||||| |||| || ||| | ||| || Sbjct 586433 AAAGTACGCTTGGCTCTCTCACATTGGGTTCTTAGCCTTCTCAACGCTCT-GCTATTTTT 586491 Query 517965 -GATTCAAATCTGT---TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 518020 ||| |||||| | | ||| ||||||||| |||||||||||||| | | || | Sbjct 586492 AGAT--AAATCTTTGCCTCTATTTTTTCTCTTAAAATCTTCAACACAAAAGTTGACCAAT 586549 Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 | || ||||||||||| |||||||| | |||| ||| | || || | || | |||| Sbjct 586550 CTGTTGTCAAAATCTTCTCCTCCCAAGTGGGTATCTCCAGCTGTGGCCTTCACCTCGAAA 586609 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | |||||||||| | | || | |||||| |||||| || || | || ||||| Sbjct 586610 ATGCCATCTTCAATCGTGAGGAGGGATACATCGAAGGTTCCTCCTCCGAGGTCGAAAATG 586669 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || | ||| ||||| | | ||||||| |||||||||||||| |||||| || ||| Sbjct 586670 AGAATGTTCTTTTCTCCCTTTCCCTTTTTATGAAGACCATACGCAATAGCAGCTGCGGTT 586729 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || ||||||||||||| ||||| | ||| ||||| | ||||| || || |||||| Sbjct 586730 GGCTCGTTAATAATTCTCATGACATTCAAACCGGCAATGGTACCTGCGTCCTTCGTGGCT 586789 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTTT 518319 |||||||| ||||| |||||||| || || || || || || |||| | | |||| Sbjct 586790 TGTCTTTGGGAATCATTAAAATAGGCTGGCACGGTGATCACTGCATTTTTGATGGACTTT 586849 Query 518320 ACCAATATAAGCGCT--TGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGT 518377 |||| || |||| ||| ||| |||||| || |||| ||| || || |||| Sbjct 586850 CCCAA---AAACGCTTCTGCATTTTCTTTCATCTTTTGCAAAACCATGGAGGAGATTTCC 586906 Query 518378 TCTGG--GGAAT-ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 518434 ||||| ||||| ||| ||| || ||| || || |||| || || | | Sbjct 586907 TCTGGGTGGAATAATTTCTT---CTCCCCTTGGTAGCTCACCTCAATCATGGGCTTCTCA 586963 Query 518435 CCAAC-----ATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGT 518489 |||| ||| | || |||| ||||||| |||||||| ||| || | Sbjct 586964 TCAACACCGGATT--TGACGGTAAAGGGCCAGTGCTTCATATCGCTTTGCACGGACGACT 587021 Query 518490 CATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG 518549 | | || | || || ||||| | || ||||| || | || || ||| || | | Sbjct 587022 CGGTGAACTTCCTTCCGATTAACCTCTTCGCATCGAAGACGGTGTTCTCTGGGTTCCTCG 587081 Query 518550 CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATG 518609 | |||| | || || |||||||| || || || || || || || | ||||| | Sbjct 587082 CCACTTGGTTCTTCGCAGCATCTCCTATTAGTCTCTCCGTGTCCGTGAAGGCCACATACG 587141 Query 518610 ATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATA 518669 |||| || || | || || || || || ||||| || || || || | ||| ||||| Sbjct 587142 ATGGGGTGGTTCTGTTTCCCTGGTCGTTGGCAATGATATCTACATTTTCGTTTCTCCATA 587201 Query 518670 CACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATTTT 518718 | || || || | || ||||| | ||||| || || || || || Sbjct 587202 CGCCGACGCAGGAGTAGGTGGTTCCGAGGTCAATGCCGATTGCGATGTT 587250 >seq7 Length=1562840 Score = 188 bits (208), Expect = 5e-42 Identities = 468/703 (67%), Gaps = 13/703 (2%) Strand=Plus/Minus Query 517136 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 517195 || ||||| | ||| |||||| || || || |||||||| |||| ||||| || | Sbjct 724006 TTCTTATCCTCATCTGCAAATTTTTCTGCATCGTTAATCATTTTCTCGATTTGTTCCTTG 723947 Query 517196 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 517255 |||| |||||| || || ||||| |||||| ||| || |||| ||| || Sbjct 723946 GAGAGTCTTCCCTTATCGTTCGTAATGGTAATACCTTTGCTCTTTCCTGTTCCTTTGTCT 723887 Query 517256 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 517315 | || || | ||||| ||||| ||||| | ||| |||||||| |||| || Sbjct 723886 TCCGCTTCTACGTGGAGAATGCCATTCTTATCCACAGTAAAGGTGACTTCTATTTTGGGT 723827 Query 517316 ACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCT 517375 || |||||||| || |||||||| ||| | | |||| |||||| | | |||||| Sbjct 723826 ACTCCTCTCTGTGCTGGTGGGATTCCTGTGAGTTCAAATTTTCCCAAAAGGTGATTATCC 723767 Query 517376 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 517435 || || ||| || ||| || ||||| | ||| || || | | ||| |||||| Sbjct 723766 TTTGTTAATGCTCTTTCTCCTTCGAACACTTGAATGAGGACAGCTGGTTGGTTATCTTGG 723707 Query 517436 TAAGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATT 517494 || || | ||| |||| || || || || || ||||||||| | ||||| | Sbjct 723706 TAGGTGGAAAAGG-TCTGAGACTTCTTCGTTGGGATGACTGTGTTTCTTTTAATAAGTTG 723648 Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 ||||| ||||| || | ||||||| || | | || ||||| ||||| | ||| || Sbjct 723647 CGTCATGATACCTCCAACGGTTTCTATTCCTAACGTGAGTGGAGTCACATCTAGTAGAAC 723588 Query 517555 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 | || ||| | || ||| || |||| | || | | ||||| || |||||||| Sbjct 723587 GACATCTTGTAATTCTTC-TC-------CCAAAATGATTC-CAGCTTGGATGGCAGCACC 723537 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 517674 ||||| ||||||||||| || || | | | |||| ||| || ||||| || || | Sbjct 723536 GTATGCTACAGCTTCATCTGGGTTTATACCTCTATTTGGTTCCTTTCCATTAAAGAATTC 723477 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 | | || |||| | || || ||||||| |||||||| || | ||||| |||| Sbjct 723476 TTTTATAATTTGTTGAATTTTTGGGATACGAGTAGATCCTCCTACGAGAACAATCTCAT- 723418 Query 517735 CACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCG 517793 || | || | || || ||||| || || || || | |||||||| | | Sbjct 723417 CAATTTTGCTCTTCTCATATTTTGCGTCATCTAGTACCTTCTTTACGGGTTCTAAAGTTT 723358 Query 517794 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 517836 ||||||| ||||| | | |||||| ||||| ||||| || Sbjct 723357 CTCTAAATAAGTCATCATTTAATTCTTCAAATTTGGCTCTCGT 723315 Score = 104 bits (114), Expect = 2e-16 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 518159 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 |||| || ||||| | ||| ||||| ||||| || || ||||| || || ||||| | | Sbjct 722998 TCTTCCTTCTTATCCAAACCGTACGCCAAAGCTGCTGCGGTTGGCTCGTTTATAATACGC 722939 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | | || | |||||||| ||||||||||||| || |||||||| || | ||| || Sbjct 722938 ACGATGTTCAACCCAGCAATCGTTCCTGCATCTTTTGTTGCTTGTCTCTGCGCATCATTG 722879 Query 518279 AAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAAGCGCTT-- 518335 ||||| || || ||||| | || || | | ||| |||| |||| || | || Sbjct 722878 AAATACGCTGGCACAGTTACCACTGCGTTCTTAACTGGCTTTCCCAA---AAAGGATTGA 722822 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGG 518384 || ||| ||||||||| ||||| ||| | ||||||||||||| Sbjct 722821 GCTATTTCTTTCATTTTCTCTAAAACCATGGCACTGATTTGTTCTGGGG 722773 >seq9 Length=2135711 Score = 113 bits (124), Expect = 3e-19 Identities = 161/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||| | || || || || || ||||| || |||||||||| | |||| | ||| ||| Sbjct 1425219 CCAAATGCTAAGGCCGCTGCGGTTGGCTCGTTAATAATTCGAAGGACATCCAAACCTGCA 1425160 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| ||||||||||||| || ||||| ||||| ||||| ||||| || ||||| || || Sbjct 1425159 ATTTTTCCTGCATCTTTGGTAGCTTGCCTTTGCGAATCATTAAAGTAAGCAGGCACTGTG 1425100 Query 518297 ATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTT---GCCGTTTGTTTCATTTT 518352 ||||| || | ||| ||| || |||| ||| | || ||||||| ||||||||| Sbjct 1425099 ATAACAGCTTGGTGTACTTTCCTTCCCAA-ATA---GTTTTCAGCCGTTTCTTTCATTTT 1425044 Query 518353 ACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 |||| || | ||||| ||||||||||| |||| Sbjct 1425043 TTCCAAAACGCATGCTCCTATTTGACTTGGGGAATATTTCTTG 1425001 Score = 86.0 bits (94), Expect = 5e-11 Identities = 188/279 (67%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 517268 TTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGA 517327 |||| ||| | || || |||| ||| || |||||||||||||||||||| ||||| | Sbjct 1426119 TTAATAATCGCGTTTGCGTCCACATCGAAGGTGACTTCAATTTGAGGGACTCCTCTAGGT 1426060 Query 517328 GCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTT 517387 ||||| || || || | |||| || | ||| | | |||||||| | | || | Sbjct 1426059 GCAGGGGGAATTCCCACTAAATCGAACGATCCTAACATTTTATTATCGCATGCCATTTCT 1426000 Query 517388 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT 517447 | ||| || | ||| | || ||| | || ||||| || || | | | || ||| Sbjct 1425999 CTTTCTCCTTGGAACACTTTGATGCTCACCTGTGTTTGGTTGTCAG-CTGCGGTGGAAAA 1425941 Query 517448 ACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACC 517506 |||| || || || || || || |||||||| | || | ||||| | || || Sbjct 1425940 GATCTGCGACTTCTTCGTCGGGATGGTCGTGTTTCTGTTGATCAATTTGGTGAAAACTCC 1425881 Query 517507 ACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 517545 |||| ||||||| ||| ||||| || ||| | ||||| Sbjct 1425880 ACCTAGGGTTTCTATACCTAGAGATAGGGGAATCACATC 1425842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780803840888044