Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5 372 4e-98 seq7 132 6e-26 seq9 113 6e-20 seq13 82.4 1e-10 >seq5 Length=1427117 Score = 372 bits (412), Expect = 4e-98 Identities = 1085/1653 (66%), Gaps = 26/1653 (2%) Strand=Plus/Plus Query 6509 TTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTT 6568 |||| | ||| ||||| |||||||| | ||| |||| || | |||| || || Sbjct 585605 TTCACTCCATAGCAGTAATTTTCGAGGCTATTTCTCGCTTCAATTCTTTTTTTGTTCTCC 585664 Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 |||||||| | || ||||| || || || | |||||| || || |||||| || Sbjct 585665 TCATCTTCCGCCTTGTACTTCTCAGCGTCGTTGACCATACGGTCGATTTCTTCTGGGGAC 585724 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTC 6687 ||||| ||||| ||||||||||| ||||| | ||| | ||| || | || || || | Sbjct 585725 AATCTTCCCTTGTCATTCGTAATGGTAATATGATTCTGCTTT-CCAGTGGATTTCTCAAC 585783 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| | || || | |||||||| ||||||| ||| || | || | |||||| ||| Sbjct 585784 AGCGGTGACGTTAAGGATACCATTGGCATCAATATCAAAGGTGACTTCAATTTGGGGTAC 585843 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| || || | || ||||| || | |||| |||| | | |||| ||| | Sbjct 585844 TTTCCTAGGAGCAGGGGGGATACCGTCTAGGTGAAATTTACCCAACAGGTTGTTGTCCTT 585903 Query 6808 CGCCTT----CTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTT 6863 | || || | || ||||| || |||| ||| || | ||||| ||||| Sbjct 585904 TG--TTAGGGCTCTC--TCTCCTTCGTACACTTGGATTAAGACACCTGGTTGGTTATCAG 585959 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || | |||||||| ||||| | ||| || || || |||||| ||| | | Sbjct 585960 CATAGGTGGTAAAGATTTGGCTCTTCTTCGCTGGGATGGTGGTGTTTCTCTCAATCAGCT 586019 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 |||||||| ||| || ||||| | || || || |||| ||| || ||||| | Sbjct 586020 TGGTCATAACACCTCCTGCGGTTTCCAAACCGAGGGATAGAGAGCACACATCTAAGAGGA 586079 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 | || || || | | | | ||||| | || ||||| ||||| || | || | Sbjct 586080 GTAAATCCTGCACGGCATTGGACTGATCACCAGACAAAATGGCTGCTTGCACTGCTGCAC 586139 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAG--TTCTTTACCGTTAAAATA 7101 | || ||||| || ||||| |||||||||| | ||| ||| || || || ||| | Sbjct 586140 CATACGCGACGGCTTCATCAGGGTTAATCGACCTG--CAGGCTTCCTTTCCATTGAAAAA 586197 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| | | ||||||||| || |||| || || ||||| || | || | ||| Sbjct 586198 CTCCTTAATGAGCGTTTGAATTTTTGGAATTCTCGTGGAACCACCTACAAGGACAACTTC 586257 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 | ||| || ||||| ||| | | ||| | ||| || ||||| | Sbjct 586258 GTGCACGCTCTTCTTATCCATCATGGCATCTTTCAAAACTTTCTCCACAGGAATGAGTGT 586317 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 | | ||| |||| ||||| || |||||||| | || | | | | | | | | Sbjct 586318 GTCTCTGAAGTAGTCAATACATAGCTCCTCAAATCTGGCTCTGCTCACCGTCACACTGTA 586377 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 |||| || || | | ||||||||||| ||||| | ||| | | || || || || Sbjct 586378 GTCAATACCTTCAAAAAGGGAATCAATTTCGATGGTGGCTTGGGTGGAAGAGGACAAAGT 586437 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || | |||||| |||| || | | | || | || || | Sbjct 586438 ACGCTTGGCTCTCTCACATTGGGTTCTTAGCCTTCTCAACGCTCTGCTATTTTTAGATAA 586497 Query 7402 ATCTTT--CT-TATGTTTACGTTTAAACTCTTCAG-AGAAGTGTCGAAGGAGTCTCGAAT 7457 |||||| || ||| ||| | ||||| |||||| | || || || | ||| | Sbjct 586498 ATCTTTGCCTCTATTTTTTCTCTTAAAATCTTCAACACAAAAGTTGACCAA-TCTGTTGT 586556 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 | |||||||| || |||||||| ||||| || || || || || || || || || || Sbjct 586557 CAAAATCTTCTCCTCCCAAGTGGGTATCTCCAGCTGTGGCCTTCACCTCGAAAATGCCAT 586616 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 ||||||| | | | || ||||| || || || || || ||||| |||||||| | || Sbjct 586617 CTTCAATCGTGAGGAGGGATACATCGAAGGTTCCTCCTCCGAGGTCGAAAATGAGAATGT 586676 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || | || | | | || |||| ||||| ||||| ||||| || || ||||| || | Sbjct 586677 TCTTTTCTCCCTTTCCCTTTTTATGAAGACCATACGCAATAGCAGCTGCGGTTGGCTCGT 586736 Query 7638 TAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 ||||||| | | |||| |||| || ||||| || | || || ||||| ||||||| | Sbjct 586737 TAATAATTCTCATGACA-TTCAAACCGGCAATGGTACCTGCGTCCTTCGTGGCTTGTCTT 586795 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| ||||| ||||| || || || | || || | ||| ||| || | | Sbjct 586796 TGGGAATCATTAAAATAGGCTGGCACGGTGATCACTGCATTTTTGATGGACTTTCCCAAA 586855 Query 7757 TACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||| ||| || | |||||||| ||| | || |||||| || || || || || | Sbjct 586856 AACGCTTCTGCATTTTCTTTCATCTTTTGCAA-AACCATGGAGGAGATTTCCTCTGGGTG 586914 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || |||| | || || | | || ||||||||||| || || || |||||| Sbjct 586915 GAATAATTTCTTCTCCCCTTGGTAGCTCACCTCAATCATGGGCTTCTCATCAACACCGGA 586974 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 | || || | | ||| | ||||||||| ||| || || | ||||| || Sbjct 586975 TTTGACGGTAAAGGGCCAGTGCTTCATATCGCTTTGCACGGACGACTCGGTGAACTTCCT 587034 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||| | | ||| ||||| || || ||||| | |||||| | || ||||||||| Sbjct 587035 TCCGATTAACCTCTTCGCATCGAAGACGGTGTTCTCTGGGTTCCTCGCCACTTGGTTCTT 587094 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || || || || | || | | |||| || || || ||||||||||| || Sbjct 587095 CGCAGCATCTCCTATTAGTCTCTCCGTGT---CCGTGAAGGCCACATACGATGGGGTGGT 587151 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| ||||| || ||||| |||||| ||| ||||||||||| Sbjct 587152 TCTGTTTCCCTGGTCGTTGGCAATGATATCTACATTTTCGTTTCTCCATACGCCGACGCA 587211 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || || || ||||| | ||||| |||||||| Sbjct 587212 GGAGTAGGTGGTTCCGAGGTCAATGCCGATTGC 587244 >seq7 Length=1562840 Score = 132 bits (146), Expect = 6e-26 Identities = 412/630 (65%), Gaps = 17/630 (3%) Strand=Plus/Minus Query 6538 ATTCTTCGCCTCGACCTTTTTCGCGTACTTT-TCATCTTCATCTTTATACTTTTCCGCAT 6596 ||| ||||| ||||| |||||| | | || | ||| |||||| | | ||||| |||| Sbjct 724034 ATTTTTCGCTTCGAC-TTTTTCCCTAAGATTCTTATCCTCATCTGCAAATTTTTCTGCAT 723976 Query 6597 CTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAA 6656 | | | ||| || || || | ||| || || | ||| |||||||| |||||||| |||| Sbjct 723975 CGTTAATCATTTTCTCGATTTGTTCCTTGGAGAGTCTTCCCTTATCGTTCGTAATGGTAA 723916 Query 6657 TCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCAT 6716 | || | || || | | || ||||| || ||| | | ||| ||||| || Sbjct 723915 TACCTTTGCTCTTTCCTGTTCCTTTGTCTTCCGCTTCTACGTGGAGAATGCCATTCTTAT 723856 Query 6717 CAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTA 6776 | ||| || | || | |||| ||| || ||| |||| | ||| || || || | Sbjct 723855 CCACAGTAAAGGTGACTTCTATTTTGGGTACTCCTCTCTGTGCTGGTGGGATTCCTGTGA 723796 Query 6777 AATCAAATGTACCAAGTAAACTG-TTATCCGTCGCC--TTCTTACGTTCACCTTCATAGA 6833 |||||| | || | || || |||||| | | | || | ||| ||||| | | Sbjct 723795 GTTCAAATTTTCCCAA-AAGGTGATTATCCTTTGTTAATGCT--CTTTCTCCTTCGAACA 723739 Query 6834 CTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAG 6893 ||| ||| || || ||||| |||||||| || || ||| | || ||||| | Sbjct 723738 CTTGAATGAGGACAGCTGGTTGGTTATCTTGGTAGGTGGAAAAGGTCTGAGACTTCTTCG 723679 Query 6894 ATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTC 6953 ||| || || ||||| ||||| | ||||| ||||| || | ||||| | || Sbjct 723678 TTGGGATGACTGTGTTTCTTTTAATAAGTTGCGTCATGATACCTCCAACGGTTTCTATTC 723619 Query 6954 CAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCAC 7013 | | | || || ||||| || | || | | ||||| | |||| ||| | Sbjct 723618 CTAACGTGAGTGGAGTCACATCTAGTAGAACGACATCTTGTA---ATTC------TTCTC 723568 Query 7014 CCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCG 7073 || | ||| | ||||||| | || |||||||| || || ||||| ||||| || Sbjct 723567 CCAAAATGATTCCAGCTTGGATGGCAGCACCGTATGCTACAGCTTCATCTGGGTTTATAC 723508 Query 7074 TTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTC 7133 | |||| |||| || || ||||| | || || |||||||||||||| ||||| | Sbjct 723507 CTCTATTTGGTTCCTTTCCATTAAAGAATTCTTTTATAATTTGTTGAATTTTTGGGATAC 723448 Query 7134 GTGTCGATCCACCGACCAAAACGATTTCAT 7163 | || ||||| || || | ||| || |||| Sbjct 723447 GAGTAGATCCTCCTACGAGAACAATCTCAT 723418 Score = 129 bits (142), Expect = 7e-25 Identities = 224/326 (69%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||||||| |||| || || || || | || ||||| | ||| Sbjct 723124 TCGAAGTCCTCTCCTCCCAAGTGGGTATTTCCTGCAGTTGCGTAAACCTCAAACACACCA 723065 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| || | || ||||| || || || || || | || | | | | | Sbjct 723064 TTGTCGATGACTAGGATTGACACATCGAAGGTTCCTCCTCCTAAATCGTACACCAAAATG 723005 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 |||| || || | ||||||| | ||||||||| | ||| || || ||||| || Sbjct 723004 CTCGTCTCTTCCT------TCTTATCCAAACCGTACGCCAAAGCTGCTGCGGTTGGCTCG 722951 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || |||||||| | ||||| |||||||| ||| | |||||||| || ||||||| Sbjct 722950 TTTATAATACGCACGATGTTCAACCCAGCAATCGTTCCTGCATCTTTTGTTGCTTGTCTC 722891 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 |||| ||| || || || || || || ||||| || |||| | | ||| ||| || | | Sbjct 722890 TGCGCATCATTGAAATACGCTGGCACAGTTACCACTGCGTTCTTAACTGGCTTTCCCAAA 722831 Query 7757 TACGATTCCGCGATATCTTTCATTTT 7782 | |||| || || ||||||||||| Sbjct 722830 AAGGATTGAGCTATTTCTTTCATTTT 722805 >seq9 Length=2135711 Score = 113 bits (124), Expect = 6e-20 Identities = 229/335 (68%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 7450 TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA 7509 |||| |||||||||||| || || | | |||| || ||||| || |||||||| Sbjct 1425370 TCTCTGATCGAAATCTTCCCCTCCTAGGGACGTATTTCCATTCGTCGCCTTCACTTCAAA 1425311 Query 7510 GATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 | |||||| ||| | || | ||||| ||||| |||||||| || | ||| | | Sbjct 1425310 AACACCTCCCAGAATTTCCAAAATGGAAACGTCAAAGGTACCACCTCCTAAATCATACAC 1425251 Query 7570 GAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 | | | | | ||||| |||| || | || | || | ||||| || || Sbjct 1425250 GGCAATGACCTTCCCGTCGC------TCTTTTCTAACCCAAATGCTAAGGCCGCTGCGGT 1425197 Query 7630 TGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 ||| || |||||||| ||||| ||| | || || ||||| || | |||||||| || | Sbjct 1425196 TGGCTCGTTAATAATTCGAAGGACA-TCCAAACCTGCAATTTTTCCTGCATCTTTGGTAG 1425138 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG-ACTTTC 7747 |||| | ||||||||| |||||||| || || || || | || || | ||| |||||| Sbjct 1425137 CTTGCCTTTGCGAATCATTAAAGTAAGCAGGCACTGTGATAACAGCTTG-GTGTACTTTC 1425079 Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 | || | ||| ||| || | ||||||||||| Sbjct 1425078 CTTCCCAAATAGTTTTCAGCCGTTTCTTTCATTTT 1425044 >seq13 Length=2073822 Score = 82.4 bits (90), Expect = 1e-10 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 115731 TATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCTAAAATATATTTTATAAA 115790 || |||||| ||||| || |||||| | ||||| || || || | | |||||| || Sbjct 1904260 TAGATTTTCCAAAACAATTCCATCACTGGCTGCAAAGAAGGCCAACACGTGTTTTATGAA 1904201 Query 115791 ATGTTTTTCATTATCACTTAATTCATTCCAATCATCCATATCTTTGGAAAAGTCTATCTC 115850 |||||||||||||||| |||||| | |||| | | ||| |||| ||||| || || Sbjct 1904200 ATGTTTTTCATTATCATTTAATTTTTCGAAATCTTTTAAATCGCTGGACAAGTCAATTTC 1904141 Query 115851 TTCAGCGGTCCAATTTGACATTTGGGCCTTTTTATACAAA 115890 || || ||||| ||| | |||||||| || ||| Sbjct 1904140 CTCGGCCGTCCAGAAGGACGCCTCCGCCTTTTTGTAAAAA 1904101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129830754160