Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq13 140 4e-28 >seq13 Length=2073822 Score = 140 bits (154), Expect = 4e-28 Identities = 537/834 (64%), Gaps = 11/834 (1%) Strand=Plus/Minus Query 110374 CCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||||| || |||||||||||||| | || || | || || || |||||||| || | Sbjct 559808 CCCAAATTTTTCTGATTCGATTTAGCATTACAGGAGTCTTTGTACAGCATGTAGGGAACA 559749 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCG 110493 || ||||| |||| || |||||||| ||||| || || |||| ||| Sbjct 559748 CCCGTTTCTATCTGACTCTGCAGAATGGCAAACCATAGGTCCTGCGCAAGGACGGTTTTC 559689 Query 110494 TTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA 110553 || | | | ||| ||||| || ||||| || || | || ||||||| ||| | Sbjct 559688 TTGCCCATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCCTCTCCCCATGAT 559629 Query 110554 TCAGAAAGACCCTTCGCCTTG--TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611 || | ||||| | || ||||| || | | | ||||||| | |||| | Sbjct 559628 TCGCTCA-ACCCTGGACATTCATTCGGG-CACATCAAAGTCCAATTTTTATTTTCCTTTA 559571 Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCC 110670 | |||||||| || |||||||| | ||| | || |||| || || | || ||| Sbjct 559570 CTCTCTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCTTAGC- 559512 Query 110671 TCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGT 110730 ||||| | || || || ||| || || ||||| || | || || |||||||| ||| Sbjct 559511 TCTTCCTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCACGGT 559452 Query 110731 TCGAGATAGACAGCGATGGATCCCTTACGACGACCCGCC---TGGTTAACATAGCGTGCT 110787 |||| || || |||| ||| || || | ||| || |||| ||||| | || Sbjct 559451 TCGATGTACACTGCGAAGGAACCTTTTCTCTTTCCCCCCCCTTGGTCTACATACCTAGCA 559392 Query 110788 GTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTA 110847 ||| |||| || ||||| ||||| || | | || | ||| || || || || || Sbjct 559391 GTGTCATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAATGCCGTTAGTCCCTCTG 559332 Query 110848 ATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTA 110907 || || || | | | ||| || || | || ||||| ||||| ||| || Sbjct 559331 ATGTACGAATTTTGCCCCCTAATATCCTGCACGGCCACTCCAATCCCACCAGCCGTTTTG 559272 Query 110908 CTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTG 110967 ||||| ||||||| | || || || | || || ||||| || || | || || Sbjct 559271 CTAATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTCAATTGAGTCCGATTTCATG 559212 Query 110968 GCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGT 111027 | ||||| || ||||||||||| || | || || |||| |||||| | |||||| Sbjct 559211 CAGAGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGT 559152 Query 111028 GTCGCATGAATGAACAGAC-CTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTAC 111086 || || || |||| | || ||| |||||| | ||| || || ||||| || Sbjct 559151 GTTGCGTGGGTGAA-ATACTTTTGAGACATCAGATGGTACGTCTCTAGTGCCTTCTCTAG 559093 Query 111087 ATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAG 111146 |||| ||| || ||||| | |||| ||| | || || ||| || | || || | Sbjct 559092 ATCTCCTATGTGGATCCCAATAGATACTCTCATCAGCAAATGTTGCGGTCTCTCAATGAT 559033 Query 111147 CTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 ||| |||| || || | ||||| | | || | ||||| | |||||||| Sbjct 559032 CTTCCCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTTAAACCCAAAGTA 558979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973246537200