Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13 116 8e-21 seq11 107 4e-18 >seq13 Length=2073822 Score = 116 bits (128), Expect = 8e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || |||||||||| |||||||| |||||||| | || Sbjct 509787 GTGTAGGGTGGATTCCTTCTGGATGTTGTAATCGGAGAGAGTTCTTCCATCTTCCAATTG 509728 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || || || || |||| || || || || |||||||| || ||||| |||||||| Sbjct 509727 TTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATTTT 509668 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || || || || || || ||| || ||||| || | ||||||||||| Sbjct 509667 GGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGTCTTTCCTGT 509608 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | |||||| Sbjct 509607 TAGCGTCTTCACAAAAATTTGCAT 509584 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| || ||||| || || || || |||||||| | |||||||| || || Sbjct 509568 CAAGACCAAGTGTAGGGTGGATTCCTTCTGGATGTTGTAATCCGAGAGAGTTCTTCCGTC 509509 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || || || || |||| || || || || |||||||| || ||||| Sbjct 509508 TTCCAATTGTTTTCCCGCAAAAATGAGTCTCTGCTGATCAGGGGGAATGCCCTCCTTGTC 509449 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||||| || || || || || || || || ||| || ||||| || | || Sbjct 509448 CTGAATTTTGGCTTTCACATTTTCGATAGTATCGGATGATTCTACATCAAGAGTGATGGT 509389 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||| | || || || || | |||||| Sbjct 509388 CTTTCCTGTTAGCGTCTTCACAAAAATTTGCAT 509356 >seq11 Length=2126511 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| || || | | || |||| || | ||| Sbjct 229962 GTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCACAAACCTGACATCCTCCAACTG 229903 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| |||| | || || | || ||||| || || || ||||| || |||| |||||| Sbjct 229902 CTTTCCTGAATATATTAGCCTCTGCTGGTCAGGTGGGATTCCTTCCTTATCTTCAATTTT 229843 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || |||||| ||| || || || ||||| || ||||| | || ||||| || Sbjct 229842 TGATTTAACGTTCCTAATCGTTTCGGATGCCTCCACATCCAGGGTGATGGTTTTTCCGGT 229783 Query 195117 CAAAGTTTTTACGAACACTTGCATTTATGGT 195147 || ||||||||||| | |||||||| |||| Sbjct 229782 TAATGTTTTTACGAATATTTGCATTT-TGGT 229753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476283502858