Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq13 132 5e-26 >seq13 Length=2073822 Score = 132 bits (146), Expect = 5e-26 Identities = 576/896 (64%), Gaps = 30/896 (3%) Strand=Plus/Minus Query 47922 GTATATTGTATTATTTCAGCA-CATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 ||||| | ||| ||||| ||| || || || | |||||| || || |||||||||| || Sbjct 559853 GTATACTCTATGATTTC-GCAGCAGAGGTTGCTACATTTTATGGTGCCCAAATTTTTCTG 559795 Query 47981 ATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATC 48038 ||| ||| | |||| | ||| ||||| ||||| | || || ||||||||| Sbjct 559794 ATTCGATTTAGCAT--TACAGGAGTCTTTGTACAGCATGTAGGGAACACCCGTTTCTATC 559737 Query 48039 TGAGATTCAATGATAGATTTCCAAACA----GTCCTAGCCTTTATAACAGCT--CTAGCT 48092 ||| || || ||| | ||||| ||||| | | || | | || || Sbjct 559736 TGAC--TC--TGC-AGAATGGCAAACCATAGGTCCTGCGCA--AGGACGGTTTTCTTGCC 559684 Query 48093 T-TATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC--CCCATACACATTA 48149 |||| || | || ||||| ||||||||||| || ||||| || ||||| ||| Sbjct 559683 CATATTTTCTTCCTCATATTTGGTATATAACTTTTCGAATTCCTCTCCCCATG---ATTC 559627 Query 48150 TCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCT 48208 || ||||| ||||||||||| || |||||||| | ||||| | || | |||||||| Sbjct 559626 GCTCAACCCTGGACATTCATTCGGGCACATCAAAGTCCAATTTTTATTTTCCTTTACTCT 559567 Query 48209 AGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTC 48268 ||||||||| || |||| ||| | || || | |||||| | |||||| ||||| Sbjct 559566 CTTCATAAATAGGTCAGGTACCCATACGGCGTAGAACAGATCCCTCGCTCTTAGCTCTTC 559507 Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 || || ||| | ||| || | ||| || | || || | ||||| ||||| | Sbjct 559506 CTTTCCGTGATTTTTGCGAAGGTCTAAAAATTCGAAAATGTCTGAGTGCCACGGTTCGAT 559447 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 || | ||| | |||| || || || ||||| |||| ||| || ||||| | Sbjct 559446 GTACACTGCGAAGGAACCTTTTCTCTTTCCCCCCCCTTGGTCTACATACCTAGCAGTGTC 559387 Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTC--CCGAAATA 48446 ||| |||| || | ||||||||| | || || || || || || || | | || || Sbjct 559386 ATTAAAAACCCTCAGCATTGGGACTAACCCGTTGGAAATGCCGTTAGTCCCTCTGATGTA 559327 Query 48447 TAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGAT 48506 | || | | || |||| | | | || || ||||| ||| |||| Sbjct 559326 CGAATTTTGC--CCCCTAATATCCTGCACGGCCACTCCAATCCCACCAGCCGTTTTGCTA 559269 Query 48507 ATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTT 48566 || | |||||| | || || || ||| | || ||||| || || | |||| Sbjct 559268 ATCAACGCACACTGCTTTAGAGTCTCAAATATGCCTTCAATTGAGTCCGATTTCATGCAG 559209 Query 48567 AATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGAT 48626 | |||||||| |||||| || || || || ||||| || || || || | | Sbjct 559208 AGGAGAAAACAGGAAGACATCTGTGGCCTGGGTGTCCCCGAATTGAACAACGTAGGTGTT 559149 Query 48627 GCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC 48686 || || | || | || | || | || | || || || | | |||| ||| Sbjct 559148 GCGTGGGTGAAATACTTTTGAGACATCAGATGGTACGTCTCTAGTGCCTTCTCTAGATCT 559089 Query 48687 CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTG 48746 | | || || || |||||||| | ||| | || || ||| ||||| |||| || || Sbjct 559088 CCTATGTGGATCCCAATAGATACTCTCATCAGCAAATGTTGCGGTCTCTCAATGATCTTC 559029 Query 48747 TTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||| ||| | || || || |||||||||| ||||| ||||| |||| ||| Sbjct 559028 CCATTAATTCGAAGGAGGTAGGACCTTTCCAATGTCTTAAACCCAAAGTAGTCGTA 558973 Score = 122 bits (134), Expect = 1e-22 Identities = 251/371 (68%), Gaps = 2/371 (1%) Strand=Plus/Minus Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 ||| || |||||||| |||||| ||| || ||||| ||| || || | || | Sbjct 1904474 TATCATTTATCCATTTGGCTGCCCACAAAGCTTTGTTTTTCACAGCGGGGATGTTTTCAA 1904415 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 | | | ||| |||| ||| | ||| | ||||| | || || ||||| || | Sbjct 1904414 TCGCGTGAAAGAGATTCATTCTCTCCTTCTCGTCTTTTATGTAATTGTCAATCAACAAGC 1904355 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 |||| | || ||||| ||||| |||| ||| || || || ||||||| |||| | Sbjct 1904354 TGTATGTCTCCGAATGGATATTCTCTACAGCAATTTGGAAGGCGTAAAATTTCTTTGCCT 1904295 Query 19313 CTGTTATCTGTACTTCACTACAAAATCTT-TCGACCAAATTTTCATTAACTATTCCATCA 19371 | ||||| | |||| | ||||| | ||| | | |||||| ||| ||||||||| Sbjct 1904294 CGGTTATTTTCACTTGGCGTAAAAATTTGCTCG-CTAGATTTTCCAAAACAATTCCATCA 1904236 Query 19372 CTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTA 19431 || |||||||| || || || || ||||| || ||||||||||||| ||||| | Sbjct 1904235 CTGGCTGCAAAGAAGGCCAACACGTGTTTTATGAAATGTTTTTCATTATCATTTAATTTT 1904176 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 | |||| || | ||| | || || || | ||| || | ||||| || || ||||| Sbjct 1904175 TCGAAATCTTTTAAATCGCTGGACAAGTCAATTTCCTCGGCCGTCCAGAAGGACGCCTCC 1904116 Query 19492 GCTTTTTTATA 19502 || ||||| || Sbjct 1904115 GCCTTTTTGTA 1904105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106172141360